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axio2zarr

AXIOSCAN to Zarr conversion

0.2.6
Maintainers
2

AXIO to Zarr converter

Convert AXIOSCAN dataset to Zarr.

NOTE: only those AXIOSCAN datasets with SCMYX dimensions where S=1 are supported at the moment.

Install

pip install axio2zarr

Requirements

  • aicspylibczi
  • click
  • dask
  • numpy
  • xarray
  • zarray

Usage

From Python script

from axio2zarr import axio2zarr

axio2zarr(input_path, output_path)

From command line

axio2zarr input_path output_path

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