biotraj
=======

Loading and saving raw data in trajectory formats.

This package is small excerpt from https://github.com/mdtraj/mdtraj containing only the
functionality to read and write trajectory files.
It is not intended to be used as a separate package, but is a dependency for
https://github.com/biotite-dev/biotite.
It is not integrated into the Biotite package directly due to an incompatible license.

Currently supported formats:

- *XTC*
- *TRR*
- *NetCDF*
- *DCD*


Basic trajectory file format functionality for Biotite; forked from MDTraj. 

Meet the Socket Team at BlackHat and DEF CON in Las Vegas, Aug 4-6

biotraj

Basic trajectory file format functionality for Biotite; forked from MDTraj

padix-key

(Experimental) An ambiguous license classifier was found.

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Ambiguous License Classifier

Source files are encoded using a non-standard text encoding.

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Bad text encoding

Package version is not a valid semantic version (semver).

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Bad semver

Package has dependencies with an invalid semantic version. This could be a sign of beta, low quality, or unmaintained dependencies.

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Bad dependency semver

Source files contain bidirectional unicode control characters. This could indicate a Trojan source supply chain attack. See: trojansource.codes for more information.

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Bidirectional unicode control characters

This package has multiple bin scripts with the same name. This can cause non-deterministic behavior when installing or could be a sign of a supply chain attack.

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Bin script confusion

This Chrome extension includes a content script '{scriptFile}' that runs on websites matching '{matches}'.

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Chrome Extension Content Script

This Chrome extension requests access to '{host}'.

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Chrome Extension Host Permission

This Chrome extension uses the '{permission}' permission.

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Chrome Extension Permission

This Chrome extension requests broad access to websites with the pattern '{host}'.

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Chrome Extension Wildcard Host Permission

Semantic versions published out of chronological order.

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Chronological version anomaly

Project maintainer's SSH key has been compromised.

What is a compromised SSH key?

Compromised SSH key

(Experimental) Copyleft license information was found.

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Copyleft License

Contains a Critical Common Vulnerability and Exposure (CVE).

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Title

Critical CVE

Contains a high severity Common Vulnerability and Exposure (CVE).

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High CVE

Uses debug, reflection and dynamic code execution features.

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Debug access

The maintainer of the package marked it as deprecated. This could indicate that a single version should not be used, or that the package is no longer maintained and any new vulnerabilities will not be fixed.

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Deprecated

(Experimental) Contains a known deprecated SPDX license exception.

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Deprecated SPDX exception

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Deprecated license

Package name is similar to other popular packages and may not be the package you want.

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Possible typosquat attack

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Dynamic require

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Empty package

Package accesses environment variables, which may be a sign of credential stuffing or data theft.

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Environment variable access

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Package optionally loads a dependency which is not specified within any of the package.json dependency fields. It may inadvertently be importing dependencies specified by other packages.

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Name

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File dependency

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Filesystem access

Package has a dependency with a floating version range. This can cause issues if the dependency publishes a new major version.

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Wildcard dependency

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Git dependency

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GitHub dependency

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AI-detected potential code anomaly

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AI-detected possible typosquat

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AI-detected potential malware

AI has determined that this package may contain potential security issues or vulnerabilities.

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AI-detected potential security risk

Contains native code (e.g., compiled binaries or shared libraries). Including native code can obscure malicious behavior.

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Native code

Contains high entropy strings. This could be a sign of encrypted data, leaked secrets or obfuscated code.

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High entropy strings

Contains unicode homoglyphs which can be used in supply chain confusion attacks.

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Unicode homoglyphs

Contains a dependency which resolves to a remote HTTP URL which could be used to inject untrusted code and reduce overall package reliability.

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HTTP dependency

Install scripts are run when the package is installed. The majority of malware in npm is hidden in install scripts.

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Install scripts

Package has an invalid manifest file and can cause installation problems if you try to use it.

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Invalid manifest file

Source files contain invisible characters. This could indicate source obfuscation or a supply chain attack.

What are invisible characters?

Invisible chars

(Experimental) Package license has recently changed.

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License change

(Experimental) Contains an SPDX license exception.

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License exception

This package is not allowed per your license policy. Review the package's license to ensure compliance.

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License Policy Violation

Contains long string literals, which may be a sign of obfuscated or packed code.

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Long strings

Package has recently undergone a major refactor. It may be unstable or indicate significant internal changes. Use caution when updating to versions that include significant changes.

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Major refactor

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Known malware

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Manifest confusion

Contains a medium severity Common Vulnerability and Exposure (CVE).

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Medium CVE

Contains a low severity Common Vulnerability and Exposure (CVE).

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Low CVE

This package contains minified code. This may be harmless in some cases where minified code is included in packaged libraries, however packages on npm should not minify code.

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Minified code

(Experimental) A package's licensing information has fine-grained problems.

Misc. License Issues

The package was published by an npm account that no longer exists.

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Non-existent author

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Missing dependency

(Experimental) Package does not have a license and consumption legal status is unknown.

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Missing license

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Missing package tarball

(Experimental) Package contains multiple licenses.

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Mixed license

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Modified license exception

(Experimental) Package contains a modified version of an SPDX license. Please read carefully before using this code.

What is a modified license?

Modified license

What is network access?

Network access

A new npm collaborator published a version of the package for the first time. New collaborators are usually benign additions to a project, but do indicate a change to the security surface area of a package.

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New author

Package does not specify a list of contributors or an author in package.json.

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No contributors or author data

Package does not have a linked bug tracker in package.json.

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No bug tracker

(Experimental) License information could not be found.

No License Found

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biotraj

biotraj

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