# Count Blood Cells
Count red, white blood cells to detect various diseases such as blood cancer (leukemia), lower red blood cells count (anemia)...


## Table of Contents

* [Project Structure](#project-structure)
* [Install](#install)
* [Usage](#usage)
* [Develop](#develop)
* [License](#license)

## Project Structure
```
cbc/
|-- data/
|   |-- plt/...
|   |-- rbc/...
|   |-- wbc/...
|
|-- docs/...
|
|-- models/...
|
|-- output/
|   |-- plt/...
|   |-- rbc/...
|   |-- wbc/...
|
|-- AUTHORS
|-- cbc
|-- LICENSE
|-- README.md
|-- TODO.md
|-- requirements.txt 
|-- setup.py
```

## Install
- Install straight from PyPI using pip:
```
$ pip install cbc
```
## Usage
> Please read `cbc --help` before using it
> -o flag is optional (defaults to out/ directory)
- Count blood cells (-r for red and -w for white):
```
$ cbc -r <blood-cell-image>
```
- Predict red blood cells (use Circle Hough Tranform and Connected Component Labeling with otsu's thresholding):
```
$ cbc -r -CHT -CCL -t <blood-cell-image>
```
- Predict white blood cells (with custom output directory):
```
$ cbc -w <blood-cell-image> -o outdir/
```

## Develop
- Download the project:
```
$ git clone https://github.com/nemo256/cbc
$ cd cbc 
```
- Activate virtual environment:
```
$ python -m venv venv
$ source venv/bin/activate
$ pip install -r requirements.txt
```
- Now just adapt the code to your needs and then run using the command:
```
$ chmod +x cbc
$ ./cbc
```

## License
- Please read [cbc/LICENSE](https://github.com/nemo256/cbc/blob/master/LICENSE)

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nemo256

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Bidirectional unicode control characters

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Bin script confusion

Semantic versions published out of chronological order.

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Chronological version anomaly

Project maintainer's SSH key has been compromised.

What is a compromised SSH key?

Compromised SSH key

(Experimental) Copyleft license information was found.

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Copyleft License

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Title

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High CVE

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Debug access

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Deprecated

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Deprecated SPDX exception

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Deprecated license

Package name is similar to other popular packages and may not be the package you want.

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Possible typosquat attack

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Dynamic require

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Empty package

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Environment variable access

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Name

Extraneous dependency

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File dependency

Accesses the file system, and could potentially read sensitive data.

What is filesystem access?

Filesystem access

Package has a dependency with a floating version range. This can cause issues if the dependency publishes a new major version.

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Wildcard dependency

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Git dependency

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GitHub dependency

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AI-detected potential malware

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Contains native code (e.g., compiled binaries or shared libraries). Including native code can obscure malicious behavior.

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Native code

Contains high entropy strings. This could be a sign of encrypted data, leaked secrets or obfuscated code.

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High entropy strings

Contains unicode homoglyphs which can be used in supply chain confusion attacks.

What are unicode homoglyphs?

Unicode homoglyphs

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HTTP dependency

Install scripts are run when the package is installed. The majority of malware in npm is hidden in install scripts.

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Install scripts

Package has an invalid manifest file and can cause installation problems if you try to use it.

What is an invalid manifest file?

Invalid manifest file

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What are invisible characters?

Invisible chars

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What is a license change?

License change

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What is a license exception?

License exception

This package is not allowed per your license policy. Review the package's license to ensure compliance.

What is a license policy violation?

License Policy Violation

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What's wrong with long strings?

Long strings

Package has recently undergone a major refactor. It may be unstable or indicate significant internal changes. Use caution when updating to versions that include significant changes.

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Major refactor

This package is malware. We have asked the package registry to remove it.

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Known malware

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Manifest confusion

Contains a medium severity Common Vulnerability and Exposure (CVE).

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Medium CVE

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Low CVE

This package contains minified code. This may be harmless in some cases where minified code is included in packaged libraries, however packages on npm should not minify code.

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Misc. License Issues

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Mixed license

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Modified license exception

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Modified license

What is network access?

Network access

A new npm collaborator published a version of the package for the first time. New collaborators are usually benign additions to a project, but do indicate a change to the security surface area of a package.

What is new author?

New author

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No contributors or author data

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No bug tracker

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No repository

Package does not have any tests. This is a strong signal of a poorly maintained or low quality package.

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No tests

Package is not semver >=1. This means it is not stable and does not support ^ ranges.

cbc

Count Blood Cells

Table of Contents

Project Structure

Install

Usage

Develop

License

Keywords

Related posts

cbc