Count Blood Cells
Count red, white blood cells to detect various diseases such as blood cancer (leukemia), lower red blood cells count (anemia)...
Table of Contents
Project Structure
cbc/
|-- data/
| |-- plt/...
| |-- rbc/...
| |-- wbc/...
|
|-- docs/...
|
|-- models/...
|
|-- output/
| |-- plt/...
| |-- rbc/...
| |-- wbc/...
|
|-- AUTHORS
|-- cbc
|-- LICENSE
|-- README.md
|-- TODO.md
|-- requirements.txt
|-- setup.py
Install
- Install straight from PyPI using pip:
$ pip install cbc
Usage
Please read cbc --help
before using it
-o flag is optional (defaults to out/ directory)
- Count blood cells (-r for red and -w for white):
$ cbc -r <blood-cell-image>
- Predict red blood cells (use Circle Hough Tranform and Connected Component Labeling with otsu's thresholding):
$ cbc -r -CHT -CCL -t <blood-cell-image>
- Predict white blood cells (with custom output directory):
$ cbc -w <blood-cell-image> -o outdir/
Develop
$ git clone https://github.com/nemo256/cbc
$ cd cbc
- Activate virtual environment:
$ python -m venv venv
$ source venv/bin/activate
$ pip install -r requirements.txt
- Now just adapt the code to your needs and then run using the command:
$ chmod +x cbc
$ ./cbc
License