Readme
Segmentation tool for multiple touching mouse embryo cells
This package can be installed by
pip install --user embryoseg
If you are building this from the source, clone the repository and install via
git clone https://github.com/kapoorlab/embryoseg/
cd embryoseg
pip install --user -e .
# or, to install in editable mode AND grab all of the developer tools
# (this is required if you want to contribute code back to NapaTrackMater)
pip install --user -r requirements.txt
Pipenv allows you to install dependencies in a virtual environment.
# install pipenv if you don't already have it installed
pip install --user pipenv
# clone the repository and sync the dependencies
git clone https://github.com/kapoorlab/embryoseg/
cd embryoseg
pipenv sync
# make the current package available
pipenv run python setup.py develop
# you can run the example notebooks by starting the jupyter notebook inside the virtual env
pipenv run jupyter notebook
Access the example folder and run the cells.
Under MIT license. See LICENSE.
FAQs
SmartSeed Segmentation for animal embryonic cells.
We found that embryoseg demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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