# EmbryoSeg
Segmentation tool for multiple touching mouse embryo cells 



[![Build Status](https://travis-ci.com/kapoorlab/napatrackmater.svg?branch=master)](https://travis-ci.com/github/kapoorlab/embryoseg)
[![PyPI version](https://img.shields.io/pypi/v/napatrackmater.svg?maxAge=2591000)](https://pypi.org/project/embryoseg/)

## Installation
This package can be installed by 


`pip install --user embryoseg`

If you are building this from the source, clone the repository and install via

```bash
git clone https://github.com/kapoorlab/embryoseg/

cd embryoseg

pip install --user -e .

# or, to install in editable mode AND grab all of the developer tools
# (this is required if you want to contribute code back to NapaTrackMater)
pip install --user -r requirements.txt
```


### Pipenv install

Pipenv allows you to install dependencies in a virtual environment.

```bash
# install pipenv if you don't already have it installed
pip install --user pipenv

# clone the repository and sync the dependencies
git clone https://github.com/kapoorlab/embryoseg/
cd embryoseg
pipenv sync

# make the current package available
pipenv run python setup.py develop

# you can run the example notebooks by starting the jupyter notebook inside the virtual env
pipenv run jupyter notebook
```

Access the `example` folder and run the cells.

## Algorithm

## Example


## Requirements

- Python 3.7 and above.


## License

Under MIT license. See [LICENSE](LICENSE).

## Authors

- Varun Kapoor <randomaccessiblekapoor@gmail.com>
- Leo Guginard




SmartSeed Segmentation for animal embryonic cells. 

Meet the Socket Team at BlackHat and DEF CON in Las Vegas, Aug 4-6

embryoseg

SmartSeed Segmentation for animal embryonic cells.

Entracod

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Ambiguous License Classifier

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Bad semver

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Bidirectional unicode control characters

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Bin script confusion

Semantic versions published out of chronological order.

What is a chronological version anomaly?

Chronological version anomaly

Project maintainer's SSH key has been compromised.

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Compromised SSH key

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Copyleft License

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Title

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Debug access

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Deprecated

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Deprecated SPDX exception

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Deprecated license

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Dynamic require

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Empty package

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Environment variable access

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Name

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File dependency

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Filesystem access

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Wildcard dependency

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Git dependency

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GitHub dependency

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AI-detected potential code anomaly

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High entropy strings

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Unicode homoglyphs

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HTTP dependency

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Install scripts

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Invisible chars

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Long strings

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Major refactor

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Network access

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No bug tracker

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No repository

Package does not have any tests. This is a strong signal of a poorly maintained or low quality package.

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No tests

Package is not semver >=1. This means it is not stable and does not support ^ ranges.

embryoseg

EmbryoSeg

Installation

Pipenv install

Algorithm

Example

Requirements

License

Authors

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