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Exdyn is intended to analyze colocalization relation ships between single cell transcriptomes, integrating them with spatial transcriptome.
You can install exdyn using pip command from your shell.
pip install exdyn torchtext==0.6.0
You need to prepare AnnData
objects which includes spliced and unspliced transcript counts for single cell transcriptome respectively. You can see the usage in IPython Notebook1 and IPython Notebook2.
FAQs
Analyze cell state dynamics dependent on extrinsic factors
We found that exdyn demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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