# Exdyn
Exdyn is intended to analyze colocalization relation ships between single cell transcriptomes, integrating them with spatial transcriptome.

## Instalation
You can install exdyn using pip command from your shell.
```shell
pip install exdyn  torchtext==0.6.0
```

## Usage
You need to prepare [`AnnData` objects](https://anndata.readthedocs.io/en/latest/) which includes spliced and unspliced transcript counts for single cell transcriptome respectively. You can see the usage in [IPython Notebook1](tutorial/sim_analysis_batched_experimental_conditions.ipynb) and [IPython Notebook2](tutorial/scc_analysis_colocalization_conditions.ipynb).


Analyze cell state dynamics dependent on extrinsic factors. 

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exdyn

Analyze cell state dynamics dependent on extrinsic factors

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exdyn

Exdyn

Instalation

Usage

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