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This code takes the fastq_pass folder generated by the MinION and creates a new folder where the fastq files are sorted into bins based on the estimated size.
Start with the fastq_pass folder with the barcode folders containing the zipped fastq files. In the same parent directory, a new folder called 'fastq_bins' will be created. The fastqs will be unzipped, read lengths are estimated, and then sorted into a folder called bin2000, bin5000, etc., where the bin number is the estimated plasmid size to enter in epi2me. A summary file pdf is also added to the 'fastq_bins' directory.
FAQs
Script to process fastq files before epi2me analysis
We found that fastq2folder demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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