🚀 Big News: Socket Acquires Coana to Bring Reachability Analysis to Every Appsec Team.Learn more
Socket
DemoInstallSign in
Socket

g80sxm

Package Overview
Dependencies
Maintainers
1
Alerts
File Explorer

Advanced tools

Socket logo

Install Socket

Detect and block malicious and high-risk dependencies

Install

g80sxm

Analyse and create figures for Nanonis SPM data

1.0.1
PyPI
Maintainers
1

DOI

G80SXM

G80SXM is a tool written in python to quickly analyse and create figures for Nanonis SPM data (STM/STS/nc-AFM). I am actively developing this tool so if you have any suggestions or find any bugs, feel free to create an issue. The provided ./ExampleData used to create these figures was obtained in our lab at Monash University (see publications here and here).

Installation

Install with pip: pip install g80sxm

Usage

There are a number of panels in the gui, each with a specific function. See below figures for some examples. Hovering over buttons in the GUI will also provide help. Sessions can be saved and loaded via '.g80' files so you can pick up where you left off.

nc-AFM_with_STS

  • Easily overlay atoms with correct scaling from custom .xyz files
  • Automatically or manually locate markers on the main figure that correspond to spectrum locations
  • Quickly fit spectra with
    • Reference curves/Other STS curves
    • Gaussian
    • Fermi-Dirac
    • More

STM_with_Grid_and_STS

  • Visualise grid data from .3ds files (middle panel)
  • Easily pull out individual curves from a grid
  • Ability to average curves from several pixels within a grid. In this example, each spectrum plotted is an average of three spectra from the middle panel as denoted by the blue, orange and green crosses

TOPO_with_FitSteps

  • Plot multiple 1D cuts through data
  • Label and colour line cuts
  • Fit profiles to accurately determine step edge heights
  • Easily add, position, and style inset figures

TOPO_with_FFT_and_FFTInset

  • View FFT and label peaks

TOPO_with_filter

  • Apply rolling and high-pass filters
  • More filters being added soon

Keywords

stm

FAQs

Did you know?

Socket

Socket for GitHub automatically highlights issues in each pull request and monitors the health of all your open source dependencies. Discover the contents of your packages and block harmful activity before you install or update your dependencies.

Install

Related posts