navigate-confocal-projection

navigate-confocal-projection

confocal projection imaging plugin for an oblique plane microscopy.

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Overview

Oblique plane microscopes (OPMs) are a class of light-sheet microscopes that obliquely illuminate the sample, and use aberration-free remote focusing to reorient the captured fluorescence onto a 2D camera array. This plugin provides a confocal projection imaging mode for the OPM, which allows the user to capture a 2D projection of the sample at a given depth.

More information on oblique plane microscopy can be found in the following publications:

• A versatile oblique plane microscope for large-scale and high-resolution imaging of subcellular dynamics
• Resolution doubling in light-sheet microscopy via oblique plane structured illumination
• Increasing the field-of-view in oblique plane microscopy via optical tiling
• Real-time multi-angle projection imaging of biological dynamics

Installation

Please refer to the installation instructions for navigate.

Usage

After installation, plugins can be accessed and managed through the navigate interface.

Support

For support, please open an issue in the GitHub repository or contact the navigate team.

License

Navigate-confocal-projection is open source and available under an MIT license. See the LICENSE for details.