Latest Threat Research:SANDWORM_MODE: Shai-Hulud-Style npm Worm Hijacks CI Workflows and Poisons AI Toolchains.Details
Socket
Book a DemoInstallSign in
Socket

ontobio

Package Overview
Dependencies
Maintainers
6
Versions
208
Alerts
File Explorer

Advanced tools

Socket logo

Install Socket

Detect and block malicious and high-risk dependencies

Install

ontobio

Library for working with OBO Library Ontologies and associations

pipPyPI
Version
2.9.12
Maintainers
6

|PyPI|

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs <https://ontobio.readthedocs.io>__

Notebooks

See the Jupyter Notebooks <http://nbviewer.jupyter.org/github/biolink/ontobio/tree/master/notebooks/>__ for code examples

Mailing list

  • biolink-api google group <https://groups.google.com/forum/#!forum/biolink-api>__

.. |PyPI| image:: https://img.shields.io/pypi/v/ontobio.svg :target: https://pypi.python.org/pypi/ontobio

Keywords

ontology graph obo owl sparql networkx network

FAQs

Did you know?

Socket

Socket for GitHub automatically highlights issues in each pull request and monitors the health of all your open source dependencies. Discover the contents of your packages and block harmful activity before you install or update your dependencies.

Install

Related posts