# plate_layout

[![PyPI - Version](https://img.shields.io/pypi/v/plate-layout.svg)](https://pypi.org/project/plate-layout)
[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/plate-layout.svg)](https://pypi.org/project/plate-layout)

-----

**Table of Contents**

- [Installation](#installation)
- [License](#license)
- [Example](#example)

## Installation

```console
pip install plate-layout
```

## License

`plate-layout` is distributed under the terms of the [MIT](https://spdx.org/licenses/MIT.html) license.

### TODO
- Add python script and a main function for CLI usage ...

## Example

### Defining the plate type and quality control setup
The plate dimensions and (optional) quality control layouts are are defined in a toml file; see `plate_config.toml' in the config folder for an example. 


```python

import plate_layout as pl
import pandas as pd
import numpy as np
import logging

pl.logger.setLevel(logging.INFO)
```

### Create a plate layout 
Create plate design by specifying the path to a config file directly when instantiating the class, 


### Load study data and randomize order 

### Batches - distributing samples on plates


### Export batch lists to file
You can export batch lists using the `to_file` method and specify desired file format and which columns to export. 

### Plot plate layouts


A tool to create and visualize sample layouts for multiwell plates. 

Meet the Socket Team at BlackHat and DEF CON in Las Vegas, Aug 4-6

plate-layout

A tool to create and visualize sample layouts for multiwell plates.

mzfilip

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Ambiguous License Classifier

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Bad semver

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Bad dependency semver

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Bidirectional unicode control characters

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What is bin script confusion?

Bin script confusion

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Chrome Extension Content Script

This Chrome extension requests access to '{host}'.

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Chrome Extension Host Permission

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Chrome Extension Permission

This Chrome extension requests broad access to websites with the pattern '{host}'.

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Chrome Extension Wildcard Host Permission

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Chronological version anomaly

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Compromised SSH key

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Copyleft License

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Title

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High CVE

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Debug access

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Deprecated

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Deprecated SPDX exception

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Deprecated license

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Possible typosquat attack

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Dynamic require

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Empty package

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Environment variable access

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File dependency

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Filesystem access

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Wildcard dependency

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Git dependency

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GitHub dependency

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What is an AI-detected potential code anomaly?

AI-detected potential code anomaly

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AI-detected possible typosquat

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AI-detected potential malware

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AI-detected potential security risk

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Native code

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High entropy strings

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Unicode homoglyphs

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HTTP dependency

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Install scripts

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Invisible chars

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Long strings

Package has recently undergone a major refactor. It may be unstable or indicate significant internal changes. Use caution when updating to versions that include significant changes.

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Major refactor

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Modified license

What is network access?

Network access

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New author

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plate-layout

plate_layout

Installation

License

TODO

Example

Defining the plate type and quality control setup

Create a plate layout

Load study data and randomize order

Batches - distributing samples on plates

Export batch lists to file

Plot plate layouts

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