Provides a Python API to manipulate the MIP analysis pipeline: setup, starting, monitoring, and parsing output.
After a case has been solved or abandoned it is necessary to wrap up the analysis and archive the results. Pymip will handle this task by bundling the most vital assets from the output and deleting the rest.
Assets that are kept:
Pymip will not touch any of the files under "exomes/genomes" only "analysis". Physically the files will be collected in a folder under "exomes/genomes" names "archive". The script will also update the AnalysisRunStatus in the QC sample info file to Archived.
$ pip install --editable .
Anyone can help make this project better - read CONTRIBUTING to get started!
MIT. See the LICENSE file for more details.
FAQs
Provides a Python API to manipulate MIP
We found that pymip demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
Did you know?
Socket for GitHub automatically highlights issues in each pull request and monitors the health of all your open source dependencies. Discover the contents of your packages and block harmful activity before you install or update your dependencies.
Security News
The Linux Foundation is warning open source developers that compliance with global sanctions is mandatory, highlighting legal risks and restrictions on contributions.
Security News
Maven Central now validates Sigstore signatures, making it easier for developers to verify the provenance of Java packages.
Security News
CISOs are racing to adopt AI for cybersecurity, but hurdles in budgets and governance may leave some falling behind in the fight against cyber threats.