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Readme
This is a POC Python implementation of the proposed Unified Single-cell Data Model.
This code is hosted at PyPI, so you can do
python -m pip install tiledbsc
To install a specific version:
python -m pip install git+https://github.com/single-cell-data/TileDB-SingleCell.git@0.0.6#subdirectory=apis/python
To update to the latest version:
python -m pip install --upgrade tiledbsc
tiledb
(see ./setup.cfg for version), in addition to other dependencies in setup.cfg.cd
into your checkout and then cd apis/python
python -m pip install .
python setup.py develop
venv
:python -m venv venv
. ./venv/bin/activate
python -m pip install .
python -m pytest tests
Please see https://github.com/single-cell-data/TileDB-SingleCell/issues.
FAQs
Python API for efficient storage and retrieval of single-cell data using TileDB
We found that tiledbsc demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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