IJ-Plugins Toolkit
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IJ-Plugins Toolkit is a set of plugins for ImageJ. The plugins are grouped into:
-
3D IO - import and export of data in 3D formats.
-
3D Toolkit - operations on stacks interpreted as 3D images, including
morphological operations.
-
Color - color space conversion, color edge detection (color and
multi-band images).
-
Filters - fast median filters, coherence enhancing diffusion, and various anisotropic diffusion filters.
-
Graphics - Texture Synthesis - A plugin to perform texture synthesis
using the image quilting algorithm of Efros and Freeman.
-
Segmentation - image segmentation through clustering, thresholding, and
region growing.
ImageJ Plugins Installation
Automatic Installation Through Update Center
For ImageJ 2 or Fiji you can install IJ-Plugins Toolkit using update center:
http://sites.imagej.net/IJ-Plugins/
Manual Installation
-
Download
latest binaries for IJ-Plugins Toolkit. Look for version with the highest number.
Plugin binaries will be in file named: ij-plugins_toolkit_bin_*.zip
.
-
Uncompress content of ij-plugins_toolkit_bin_*.zip
to ImageJ's plugins
directory.
You can find location of ImageJ plugins directory by selecting in ImageJ
"Plugins"/"Utilities"/"ImageJ Properties", look for value of tag "plugins dir"
near the bottom of the displayed Properties' window.
-
Restart ImageJ to load newly installed plugins.
Using as a Stand-alone Library
There are some examples of using IJ-Plugins Toolkit as a stand-alone library in the [examples] folder. You will need to add dependency on:
groupId : net.sf.ij-plugins
artifactId: sbt-imagej
version : 2.0.0
For instance, for SBT it would be:
"net.sf.ij-plugins" % "sbt-imagej" % "2.0.0"
Running from source
You can build and run the plugins within ImageJ using SBT task ijRun
sbt ijRun
It will build the code, setup plugins directory, and the start ImageJ. ijRun
is provided by SBT plugin sbt-imagej.