version 2.54.3 - 2024/06/12

• Minor improvement to the onlyPanels view - we now also hide the panel name and top-border. (#1790)

version 2.54.2 - 2024/06/12

• Tangletrees can now be coloured by genotype (previously such a colouring would only work for the LHS tree). This requires the genome annotation (in the dataset JSON) to be identical across both datasets. This can be especially useful when comparing trees generated from the same sequences or a similar set of sequences in order to understand the differences in tree structure. (#1785)
• Bugfix: The legend entries shown for a tangletree may not have shown values only observed in the RHS tree when the dataset was first loaded. (#1785)
• Bugfix: Multiple trees ("tanglegrams") now render correctly in Safari. (#1786)
• Bugfix: The onlyPanels URL query now hides all parts of the footer, as intended. (#1787)

version 2.54.1 - 2024/06/10

• Fixed a big bug where clicking on tips (and shift-clicking on branches) on the RHS tree in a tanglegram would bring up a modal detailing a node in the LHS tree. (#1783)
• Fixed a small bug where branch labels prevented you from hovering on the branch itself, a situation that was more common in tangletrees. (#1783)

version 2.54.0 - 2024/06/06

• Add a link-out to use datasets in Nextclade (this functionality is only enabled when running within the larger nextstrain.org ecosystem.) This builds on functionality introduced in Nextclade 3.7.0 allowing an Auspice dataset to be used as a nextclade dataset so that users can then add new sequences (via drag-and-drop) and see them placed on the tree. (#1776)

version 2.53.0 - 2024/04/29

• Add a download-JSON button within the downloads modal. This is disabled for GISAID sourced data. (#1764)
• Add link-outs to load the current dataset in external platforms MicrobeTrace and Taxonium. Note this functionality only works when Auspice is running within the larger nextstrain.org server. (#1763)

Internal changes.

• Use Nextstrain CLI to create PRs on other repos. (#1765)
• Create PRs on projects which depend on Auspice by adding a label (#1767 and #1768)

version 2.52.1 - 2024/02/21

• Bugfix: Restore the intended behaviour when hovering or clicking on terminal branches. (#1753)

version 2.52.0 - 2024/02/09

• Sidebar filtering now contains all non-continuous metadata defined across the tree (i.e. all data within node.node_attrs). The traits listed in meta.filters are now only used to determine which filters to list in the footer of the page. (#1743)
• The interaction between strain-selected modals and the corresponding strain-filter has been improved. We now preserve the strain filter state present before the node was clicked. (#1749)
• Added a link to this changelog from the Auspice view. (#1727)
• Updated "contact us"-type links to point to nextstrain.org/contact. (#1734)
• Bugfix: When showing the strain-selected modal, disabling the corresponding filter now clears the modal. (#1749)

Internal changes which should not result in any different behaviour while using Auspice.

• Updates to GitHub actions. (#1739, #1741)
• Updates to documentation setup. (#1730)
• Updates to PR template. (#1728)
• Updated and then reverted Webpack configuration (#1733, #1738)

version 2.51.0 - 2023/11/16

• Redesigned the panel sections in the sidebar. (#1704)
  • Moved panel visibility toggles to the header.
  • Added the ability to show/hide panel options.
• customisation: Renamed sidebarTheme.unselectedBackground to a more generic name, sidebarTheme.alternateBackground, while keeping backwards compatibility. (#1704)
• Fixed a bug that prevented the narratives debugger (/edit/narratives) from working. (#1725)

version 2.50.0 - 2023/10/30

• Fixed a bug that showed SVG-related errors in the development browser console when viewing a tree in the rectangular layout. (#1714)
• Added "Data updated" date under the dataset title, in addition to the existing mention in the footer. (#1715)
• Updated docs on customizing the sidebar style with sidebarTheme. (#1718)

Internal changes which should not result in any different behaviour while using Auspice.

• Updated Redux usage. (#1710, #1712)

version 2.49.0 - 2023/09/28

• Allow the tip label key to be defined in the JSON via display_defaults.tip_label, in addition to being settable via a URL query. See the docs or PR #1668 for more.
• Tree-specific options in the sidebar are now hidden when the tree panel is not displayed. (#1698)
• Fixed a bug where the radial trees would have their inner grid circles offset. (#1693)
• Fixed a bug where SVG export of the entropy panel was invalid. (#1694)

Internal changes which should not result in any different behaviour while using Auspice.

• Read the Docs build config updated. (#1700)
• CI improvements. (#1702)