auspice - npm Package Versions

version 2.41.0 - 2022/11/10

• A narratives debugger has been added at /edit/narratives. See PR #1590 or the new Narratives Tutorial for more details. Note: this functionality will prevent auspice from viewing a dataset JSON named edit_narratives.json.

version 2.40.1 - 2022/11/07

• Fixed a bug where downloaded Newick trees may be empty - often this happens when there is no newick representation for the tree being displayed and in these cases a warning notification is shown. See PR #1591 for more.
• Fixed a bug where branch labels prevented clicking on the underlying branches. See PR #1584 for more.

version 2.40.0 - 2022/10/21

• Keep the measurements panel's color-by means in a stable order while filtering. See PR #1566 for more.
• Allow setting the "show all branch labels" toggle via the URL query ?showBranchLabels=all. See PR #1575 for more.
• Fix a bug where ordinal scales wouldn't be colored correctly in the frequency pane. See Issue #843 and PR #1578 for more.
• The legend can no longer have duplicate entries (both for user provided color scales and for continuous scales), which also prevents the display bug where legend items may be overlapping when switching to a different coloring. See issues #1521 and #1547, and PR 1576.
• Re-enable temporal confidence bars for trees which include this data. See PR #1577 for more.

version 2.39.0 - 2022/10/06

• A range of improvements to the measurements panel including reference sera coloring and more informative tooltips. See PR 1557 for more.
• Color-by genotype dropdown: nuc (nucleotide) is now the first item in the list. See PR 1550 for more.
• Fixed a bug where zooming out one level would instead jump multiple levels. See PR 1552 for more.
• Added a toggle to force the display of all branch labels, rather than only those meeting a certain threshold. See PR 1554 for more.
• Install documentation updated. See PR 1551 for more.

version 2.38.0 - 2022/09/16

• Mutations now separate out "undeletions" & add information on what the categories represent. See PR 1542 for more.
• Bugfix where certain GISAID accessions may cause a crash when clicked. See PR 1531 for more.
• Duplicate / missing node names now emit a warning to the console, not an error. See PR 1543 for more.

Internal (Nextstrain-related) changes

• Documentation theme added. See PR 1535 for more.
• Bioconda rebuild instructions added. See PR 1539 for more.
• Minor docs formatting fixes. See PR 1533 for more.

version 2.37.3 - 2022/06/16

• Allow temporal colour scales. See PR 1523 for more.
• Change ordering of sidebar tree options. See PR 1524 for more.
• (Docs) Corrected note about CORS. See PR 1525 for more.
• (Internal) Automated how we make GitHub releases. See PR 1518 for more.

version 2.37.2 - 2022/05/27

• Allow trees with duplicate node names / missing node names (but raise an error in the console). See PR 1514 for more.
• Fix a bug where the right hand side of the tree could disappear. See PR 1513 for more.

version 2.37.1 - 2022/05/11

• Ensure legend colours are exactly the same as the tip colours. See PR 1506 for more.
• Always show branch labels if they are the root of a subtree. See PR 1503 for more.
• Docs improvements. See PR 1507 for more.
• CI improvements. See PR 1505 for more.

version 2.37.0 - 2022/04/28

• Improved footer styling of tables. See PR 1502 for more.
• Branch labels are now shown/hidden depending according to the proportion of visible tips they define. See PR 1501 for more.

version 2.36.0 - 2022/03/28

Functional improvements

• Dynamically update regression lines to reflect filtered data. See PR 1484 for more.
• Scatterplot axes can now use "node-order" which is the order nodes appear on the rectangular tree. See PR 1494 for more.
• Show an "experimental" icon and on-hover info text for the explode-tree functionality. See PR 1486 for more.
• You can now use the escape key to remove a tip/branch info modal over the tree. See PR 1485 for more.

Bugfixes

• Drag-n-drop metadata now works for the second tree. See PR 1489 for more.
• Available filters are now correct when switching from a narrative to exploding the data. See PR 1493 for more.
• The auspice server only accepts valid sidecar file types. See PR 1495 for more.