js library for converting biomedical entity ids in batch. 

biomedical_id_resolver

js library for converting biomedical entity ids in batch

kevinxin

marcocano

newgene

ericz1803

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		@@ -63,3 +63,3 @@ exports.CURIE = {
		"name": ["mondo.label", "disgenet.xrefs.disease_name"],
		"MESH": ["mondo.xrefs.mesh", "ctd.mesh"],
		"MESH": ["mondo.xrefs.mesh", "disease_ontology.xrefs.mesh", "ctd.mesh"],
		"OMIM": ["mondo.xrefs.omim", "hpo.omim"],
		@@ -128,3 +128,3 @@ "EFO": ["mondo.xrefs.efo"],
		"Pathway": {
		"id_ranks": ["Reactome", "KEGG", "PHARMGKB", "WIKIPATHWAYS", "name"],
		"id_ranks": ["REACT", "KEGG", "PHARMGKB", "WIKIPATHWAYS", "name"],
		"semantic": "Pathway",
		@@ -167,2 +167,2 @@ "api_name": "geneset API",
		}
		}
		}

		{
		"name": "biomedical_id_resolver",
		"version": "1.2.0",
		"version": "1.2.1",
		"description": "js library for converting biomedical entity ids in batch",
		@@ -5,0 +5,0 @@ "main": "src/index.js",

		@@ -24,3 +24,3 @@ const _ = require('lodash');
		let res = this.generateBioThingsAPIPromisesByCuries(this.inputIDs[semanticType], semanticType);
		let chunked_promises = _.chunk(res.valid, 5);
		let chunked_promises = _.chunk(res.valid, 2);
		chunked_promises.map((item, i) => {
		@@ -140,3 +140,3 @@ if (!(i in this.promises)) {
		url: meta['url'],
		timeout: 10000,
		timeout: 30000,
		data: query,
		@@ -195,3 +195,3 @@ headers: { 'content-type': 'application/x-www-form-urlencoded' }
		// note: maximum length of inputs for BioThings APIs is 1000;
		let chunked_ids = _.chunk(ids, 1000);
		let chunked_ids = _.chunk(ids, 500);
		let axiosQuery;
		@@ -198,0 +198,0 @@ for (let i = 0; i < chunked_ids.length; i++) {

		@@ -31,2 +31,3 @@ const biothings_parser = require("./biothingsParser");
		} else {
		// console.log("failed", item)
		}
		@@ -33,0 +34,0 @@ })

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