:unicorn_face: add biothings apis node attributes during id resoltuion (4d0a345)
add resolver using SRI (6302a7e)
identify BTE via User-Agent (e20d2fb)
re-throw SRI resolver errors with more informative msg (cc266b9)
refactor SRI resolver to minimize queries made (6783b4e)

Bug Fixes

:bug: check for empty list of semantic types given to attr module (a865c1c)
:bug: only the first id of each prefix was returned (1dd555c)
:sparkles: add attrs to unresolvable entities (5981e50)
:sparkles: remove debug logs (0ee21a2)
:sparkles: rename chemblmax phase field to FDA approved (27ce8fd)
:sparkles: restructure add attr module, supports batch, new call signature (2ad62c9)
:sparkles: skip tests not relevant to current prod, update relevant to use ChemicalEntity (aed0a04)
:sparkles: update location where addattributes gets called, update method signature to allow for list of semantic types vs one (2954410)
:sparkles: update max_phase mapped to drug_regulatory_status_world_wide (1032533)
add _leafSemanticType and _dbIDs fields (c9e74bc)
add batching to sri query to fix 414 errors (326fca6)
add names to curies array in sri resolver (92062b3)
change CLINVAR id from RCV to Variant ID (53d403a)
change id priorities to match biolink's (aae97c5)
comment out semantic types that aren't used (347bb82)
fix problem with unresolved id response shape (a3c561c)
fix results merging (502e4ff)
handle empty responses from node normalizer (8172b4a)
normalizer queries in 5k chunks (1c18cc0)
query using post instead of get (58fffec)
remove dbnsfp field mapping for clinvar id namespace (04ac54c)
remove names from curies (942c93e)
return semantic type when curie is unresolvable (fc5632a)
shorten debug statement (94e7197)
update sri endpoint to prod (fdc3ebb)
update tests with new signature (5bd7ae0)
use input semantic type instead of sri resolved type (5854a77)
use sri resolved type when input type is unknown (30f465c)

3.10.0

Diff

newgene

published 3.10.0 • 3 years ago

Changelog

Source

3.10.0 (2021-08-16)

Features

support Disease NCIT, SNOMEDCT IDs (9cc4908)

Bug Fixes

add BiologicalProcess KEGG back in (ccf257a)
add ClinicalFinding semantic type (56f083f)
add Disease, SequenceVariant mappings (e36bc09)
add MEDDRA id mapping for Disease semantic type (e914976)
add Pathway GO, SMPDB IDs (c8b2556)
adjust fields for mapping SNOMEDCT (88dd2a4)
config + types file: ChemicalSubstance -> SmallMolecule, drug semantic type (2cfbe88)
quick fixes to README to match config file (da6df54)
reformatting, add mappings + ID prefixes (546f5a7)
remove ChemicalSubstance support (d78a30f)
simple changes (df2139c)
try to add backwards compatibility for ChemicalSubstance (987ab97)
update README to reflect config/types file changes (3792602)
update rhea tests (95ec48f)
update tests for ChemicalSubstance -> SmallMolecule (0699af0)