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molstar

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molstar - npm Package Versions

13
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29

4.0.1

Diff
dsehnal
 published 4.0.1 •

Changelog

Source

[v4.0.1] - 2024-02-19

  • Fix BinaryCIF decoder edge cases. Fixes mmCIF model export from data provided by ModelServer.
  • MolViewSpec extension: support for MVSX file format
  • Revert "require WEBGL_depth_texture extension" & "remove renderbuffer use"

4.0.0

Diff
arose
 published 4.0.0 •

Changelog

Source

[v4.0.0] - 2024-02-04

  • Add Mesoscale Explorer app for investigating large systems
  • [Breaking] Remove cellpack extension (superseded by Mesoscale Explorer app)
  • [Breaking] Set minimal node.js version to 18
  • [Breaking] Generalize rcsb/assembly-symmetry/ extension
    • Move to assembly-symmetry/
    • Remove RCSB specific dependencies and prefixes
  • [Breaking] Require WEBGL_depth_texture webgl extension
    • Remove renderbuffer use
  • [Breaking] Change build target to ES2018
    • Custom builds only require ES6 for dependencies like immer.js
  • [Breaking] Changed createPluginUI
    • The function now takes a single options argument
    • The caller must specify a render method that mounts the Mol* react component to DOM
      • A default renderReact18 method is provided, but needs to be imported separately
      • To support React 16 and 17, ReactDOM.render can be passed
  • Improve SetUtils performance using ES6 features
  • [Breaking] Reduce memory usage of SymmetryOperator.ArrayMapping
    • Requires calling methods from instance
  • [Breaking] Fix mol-model/structure/model/properties/seconday-structure.ts file name (#938)
  • [Breaking] Add Canvas3DContext runtime props
    • Props: pixelScale, pickScale, transparency (blended, wboit, dpoit)
    • Replaces instantiation-time attribs
  • [Breaking] Change default compile target to ES2018
  • [Breaking] Add culling & LOD support
    • Cull per-object and per-instance
    • Cull based on frustum and camera distance
    • LOD visibility based on camera distance
    • Special LOD mode for spheres with automatic levels
    • Occlusion culling (only WebGL2)
      • Hi-Z pass
      • Cull based on previous frame's Hi-Z buffer
  • Add stochastic/dithered transparency to fade overlapping LODs in and out
  • Add "Automatic Detail" preset that shows surface/cartoon/ball & stick based on camera distance

3.45.0

Diff
arose
 published 3.45.0 •

Changelog

Source

[v3.45.0] - 2024-02-03

  • Add color interpolation to impostor cylinders
  • MolViewSpec components are applicable only when the model has been loaded from MolViewSpec
  • Add snapshotKey and tooltip params to loci LabelRepresentation
  • Update FocusLoci behavior to support snapshotKey param
    • Clicking a visual with snapshotKey will trigger that snapshot
  • Render multiline loci label tooltips as Markdown
  • ParamDefinition.Text updates:
    • Support multiline inputs
    • Support placeholder parameter
    • Support disableInteractiveUpdates to only trigger updates once the control loses focus
  • Move dependencies related to the headless context from optional deps to optional peer deps

4.0.0-beta.0

Diff
arose
 published 4.0.0-beta.0 •

3.44.0

Diff
arose
 published 3.44.0 •

Changelog

Source

[v3.44.0] - 2024-01-06

  • Add new cartoon visuals to support atomic nucleotide base with sugar
  • Add thicknessFactor to cartoon representation for scaling nucleotide block/ring/atomic-fill visuals
  • Use bonds from _struct_conn in mmCIF files that use label_seq_id
  • Fix measurement label offsetZ default: not needed when scaleByRadius is enbaled
  • Support for label rendering in HeadlessPluginContext
  • MolViewSpec extension
    • Support all X11 colors
    • Support relative URIs
    • CLI tools: mvs-validate, mvs-render, mvs-print-schema
    • Labels applied in one node
  • ModelServer SDF/MOL2 ligand export: fix atom indices when additional atoms are present
  • Avoid showing (and calculating) inter-unit bonds for huge structures
  • Fixed DragOverlay on WebKit/Safari browsers

3.43.1

Diff
dsehnal
 published 3.43.1 •

Changelog

Source

[v3.43.1] - 2023-12-04

  • Fix react-markdown dependency

3.43.0

Diff
arose
 published 3.43.0 •

Changelog

Source

[v3.43.0] - 2023-12-02

  • Fix State.tryGetCellData (return type & data check)
  • Don't change camera.target unless flyMode or pointerLock are enabled
  • Handle empty CIF files
  • Snapshot improvements:
    • Add key property
    • Ability to existing snapshot name, key, and description
    • Support markdown in descriptions (ignores all HTML tags)
    • Ability to link to snapshots by key from descriptions
    • Separate UI control showing description of the current snapshot
  • Do not activate drag overlay for non-file content
  • Add structure-element-sphere visual to spacefill representation
  • Fix missing await in HeadlessPluginContext.saveStateSnapshot
  • Added support for providing custom sequence viewers to the plugin spec
  • MolViewSpec extension (MVS)
  • Add URL parameters mvs-url, mvs-data, mvs-format
  • Add drag&drop for .mvsj files
  • Fix bumpiness scaling with ignoreLight enabled
  • Add transforms & label params to ShapeFromPly
  • Optimize LociSelectManager.selectOnly to avoid superfluous loci set operations
  • Dispose of viewer on unload event to aid GC

3.42.0

Diff
arose
 published 3.42.0 •

Changelog

Source

[v3.42.0] - 2023-11-05

  • Fix handling of PDB files with insertion codes (#945)
  • Fix de-/saturate of colors with no hue
  • Improve distinctColors function
    • Add sort and sampleCountFactor parameters
    • Fix clustering issues
  • Add clipPrimitive option to spheres geometry, clipping whole spheres instead of cutting them
  • Add DragAndDropManager
  • Add options support for default bond labels

3.41.0

Diff
dsehnal
 published 3.41.0 •

Changelog

Source

[v3.41.0] - 2023-10-15

  • Add PluginContext.initialized promise & support for it in the Plugin UI component.
  • Fix undesired interaction between settings panel and the panel on the right.
  • Add ability to customize server parameters for RCSBAssemblySymmetry.

3.40.1

Diff
dsehnal
 published 3.40.1 •

Changelog

Source

[v3.40.1] - 2023-09-30

  • Do not call updateFocusRepr if default StructureFocusRepresentation isn't present.
  • Treat "tap" as a click in InputObserver
  • ModelServer ligand queries: fix atom count reported by SDF/MOL/MOL2 export
  • CCD extension: Make visuals for aromatic bonds configurable
  • Add optional file?: CifFile to MmcifFormat.data
  • Add support for webgl extensions
    • WEBGL_clip_cull_distance
    • EXT_conservative_depth
    • WEBGL_stencil_texturing
    • EXT_clip_control
  • Add MultiSampleParams.reduceFlicker (to be able to switch it off)
  • Add alphaThickness parameter to adjust alpha of spheres for radius
  • Ability to hide "right" panel from simplified viewport controls
  • Add blockIndex parameter to TrajectoryFromMmCif
  • Fix bounding sphere calculation for "element-like" visuals
  • Fix RCSB PDB validation report URL
  • Add sharpening postprocessing option
  • Take pixel-ratio into account for outline scale
  • Gracefully handle missing HTMLImageElement
  • Fix pixel-ratio changes not applied to all render passes
13
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