cmdcolin

canvas-sequencer-ts

Store, serialize, parse, and execute sequences of canvas context instructions.

clustal-js

This parses CLUSTAL (multiple sequence aligner) output format files (sometimes called .aln)

@cmdcolin/minimalpackage

simple pure-esm package compatible with tsc

@cmdcolin/minimalpackage2

simple pure-esm package compatible with tsc

emf-js

This parses emf format from Ensembl alignments

g2p_mapper

Map genome to protein coordinates and back

g2p_mapper_cli

Map genome to protein coordinates and back (CLI)

generic-filehandle

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

generic-filehandle2

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

genomefeatures

A D3 based genome feature rendering

gff-nostream

utilities to read GFF3 data

@gmod/abortable-promise-cache

add AbortController support to a cache of async requests

@gmod/bam

Parser for BAM and BAM index (bai) files

@gmod/bbi

Parser for BigWig/BigBed files

@gmod/bed

A BED file format parser with autoSql support

@gmod/bgzf-filehandle

read from a compressed bgzip file (with .gzi) as if it were uncompressed

@gmod/binary-parser

Blazing-fast binary parser builder

@gmod/cram

read CRAM files with pure Javascript

@gmod/faidx

create indexed fasta files

@gmod/genomefeaturecomponent

Provides SVG View for Genome Features rendered with the Apollo Track Web Service from JBrowse data React Component

@gmod/gff

read and write GFF3 data as streams

@gmod/gtf

read and write GTF data as streams

@gmod/hclust

Hierarchical clustering

@gmod/http-range-fetcher

caching, aggregating fetch manager for doing lots of HTTP range requests

@gmod/indexedfasta

read indexed fasta and bgzipped fasta formats