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A database server application that provides both a RESTful API and GUI for access to BED files and related basic statistics
bedhost
is a Python FastAPI module for the API that powers BEDbase
It needs a path to the bedbase configuration file, which can be provided either via -c
/--config
argument or read from $BEDBASE_CONFIG
environment variable.
Running with uvicorn
provides auto-reload. To configure, this assumes you have previously set up databio/secrets
.
.env
file to populate the environment variables referenced in the configuration file.bedhost
using uvicorn
and pass the configuration file via the BEDBASE_CONFIG
env var.source ../bedbase.org/environment/production.env
BEDBASE_CONFIG=../bedbase.org/config/api.bedbase.org.yaml uvicorn bedhost.main:app --reload
You can change the database you're connecting to by using a different config file:
BEDBASE_CONFIG=../bbconf/tests/data/config.yaml uvicorn bedhost.main:app --reload
BEDBASE_CONFIG=../bedbase.org/config/bedbase2.yaml uvicorn bedhost.main:app --reload
Now, you can access the service at http://127.0.0.1:8000. Example endpoints:
docker build -t databio/bedhost -f .Dockerfile .
docker build -t databio/bedhost:dev -f dev.Dockerfile .
docker build -t databio/bedhost:dev -f test.Dockerfile .
Existing images can be found at dockerhub.
Configuration settings and deployment instructions are in the bedbase.org
repository.
FAQs
A database server application that provides both a RESTful API and GUI for access to BED files and related basic statistics
We found that bedhost demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 2 open source maintainers collaborating on the project.
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