emtools

Utilities for CryoEM data manipulation

0.1.3

Source

PyPI

Maintainers: 1

.. |logo_image| image:: https://github.com/3dem/emhub/wiki/images/emtools-logo.png :height: 60px

|logo_image|

emtools is a Python package with utilities for manipulating CryoEM images and metadata such as STAR files or SQLITE databases. It also contains other miscellaneous utils for processes handling and monitoring, among others.

The library is composed by several modules that provide mainly classes to perform certain operations.

For more detailed information check the documentation at:

https://3dem.github.io/emdocs/emtools/

Installation

.. code-block:: bash

pip install emtools

Or for development:

.. code-block:: bash

git clone git@github.com:3dem/emtools.git
pip install -e emtools/

Usage

Testing

.. code-block:: bash

python -m unittest emtools.tests.test_utils
python -m unittest emtools.tests.test_metadata
python -m unittest emtools.tests.test_pipeline

How to cite

Please cite the code repository DOI: xxx

Authors

Jose Miguel de la Rosa-Trevín, St.Jude Children's Research Hospital, Memphis, TN

Keywords

electron-microscopy cryo-em structural-biology image-processing

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