Security News
The Push to Ban Ransom Payments Is Gaining Momentum
Ransomware costs victims an estimated $30 billion per year and has gotten so out of control that global support for banning payments is gaining momentum.
Readme
PySnpTools is a library for reading and manipulating genetic data.
Main Features:
SnpReader: Efficiently read genetic PLINK formats including *.bed/bim/fam files. Also, efficiently read parts of files, read kernel data, and standardize data. New features include multi-threaded BED reading, cluster-ready BED data, on-the-fly SNP generation, and larger in-memory data.
DistReader: Efficiently work with unphased BGEN format and other diploid, biallelic distribution data. Also, efficiently read parts of files. See Distribution IPython Notebook.
util: In one line, intersect and re-order IIDs from snpreader and other sources. Also, efficiently extract a submatrix from an ndarray.
IntRangeSet: Efficiently manipulate ranges of integers - for example, genetic position - with set operators including union, intersection, and set difference.
mapreduce1: Run loops locally, on multiple processors, or on any cluster.
filecache: Read and write files locally or from/to any remote storage.
pip install pysnptools
FAQs
PySnpTools
We found that pysnptools demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 4 open source maintainers collaborating on the project.
Did you know?
Socket for GitHub automatically highlights issues in each pull request and monitors the health of all your open source dependencies. Discover the contents of your packages and block harmful activity before you install or update your dependencies.
Security News
Ransomware costs victims an estimated $30 billion per year and has gotten so out of control that global support for banning payments is gaining momentum.
Application Security
New SEC disclosure rules aim to enforce timely cyber incident reporting, but fear of job loss and inadequate resources lead to significant underreporting.
Security News
The Python Software Foundation has secured a 5-year sponsorship from Fastly that supports PSF's activities and events, most notably the security and reliability of the Python Package Index (PyPI).