@adntro/raw-dna-dtc-parser - npm Package Compare versions

Comparing version 0.0.8 to 0.0.9

build/src/utils/raw-line-parser.d.ts

 import { Snp } from '../raw.models';
 export declare function cleanGenotypeLine(line: string): string;
+/**
+ *   mapper['X'] = 23
+  mapper['Y'] = 24
+  mapper['XY'] = 25
+  mapper['MT'] = 26
+ */
 export declare function convertLine2Snp(line: string): Snp;

build/src/utils/raw-line-parser.js

@@ -9,2 +9,8 @@ "use strict";
 exports.cleanGenotypeLine = cleanGenotypeLine;
+/**
+ *   mapper['X'] = 23
+  mapper['Y'] = 24
+  mapper['XY'] = 25
+  mapper['MT'] = 26
+ */
 function convertLine2Snp(line) {
@@ -15,11 +21,9 @@ if (('' + line).length > 60)
     const chrNum = parseInt(chrStr, 10);
-    const chr = chrNum === 23
-        ? 'X'
-        : chrNum === 24
-            ? 'Y'
-            : chrNum === 25
-                ? 'MT'
-                : !isNaN(chrNum) && chrNum > 0
-                    ? chrNum.toFixed(0)
-                    : chrStr;
+    const chr = chrNum === 23 ? 'X'
+        : chrNum === 24 ? 'Y'
+            : chrNum === 25 ? 'XY'
+                : chrNum === 26 ? 'MT'
+                    : !isNaN(chrNum) && chrNum > 0
+                        ? chrNum.toFixed(0)
+                        : chrStr;
     const position = parseInt(posStr, 10);
@@ -57,2 +61,5 @@ let warn = undefined;
     }
+    else if (chr === 'Y' || chr === 'XY' || chr === 'MT') {
+        a2 = undefined;
+    }
     return {
@@ -59,0 +66,0 @@ rsid,

package.json

 {
   "name": "@adntro/raw-dna-dtc-parser",
-  "version": "0.0.8",
+  "version": "0.0.9",
   "description": "DNA file reader (in DTC formats) and parser",
@@ -5,0 +5,0 @@ "author": "Adntro Genetics SL",

No alert changes

Improved metrics

Total package byte prevSize

44939

increased by1.05%

Lines of code

785

increased by1.68%

No dependency changes