@datagrok-libraries/bio - npm Package Compare versions

Comparing version 0.0.14 to 0.0.15

package.json

@@ -8,3 +8,3 @@ {
   "friendlyName": "Datagrok bio library",
-  "version": "0.0.14",
+  "version": "0.0.15",
   "description": "",
@@ -11,0 +11,0 @@ "dependencies": {

src/viewers/web-logo.d.ts

 import * as DG from 'datagrok-api/dg';
-import { StringDictionary } from '@datagrok-libraries/utils/src/type-declarations';
+import { SeqPalette } from '../seq-palettes';
 declare module 'datagrok-api/src/grid' {
@@ -35,3 +35,5 @@ interface Rect {
     static residuesSet: string;
-    protected cp: StringDictionary | null;
+    private initialized;
+    protected cp: SeqPalette | null;
+    private host?;
     private msgHost?;
@@ -50,5 +52,6 @@ private canvas?;
     considerNullSequences: boolean;
-    sequenceColumnName: string;
-    startPositionName: string;
-    endPositionName: string;
+    sequenceColumnName: string | null;
+    startPositionName: string | null;
+    endPositionName: string | null;
+    fixWidth: boolean;
     private positionNames;
@@ -60,3 +63,3 @@ private startPosition;
     constructor();
-    init(): Promise<void>;
+    private init;
     rootOnSizeChanged(args: any): void;
@@ -67,7 +70,20 @@ /** Assigns {@link seqCol} and {@link cp} based on {@link sequenceColumnName} and calls {@link render}().
     onPropertyChanged(property: DG.Property): void;
-    onTableAttached(): void;
+    onTableAttached(): Promise<void>;
     protected _nullSequence(fillerResidue?: string): string;
     protected _calculate(): void;
     render(recalc?: boolean): void;
+    private calcSize;
+    /**
+     * @param {DG.Column} seqCol Column to look for a palette
+     * @param {number}  minLength minimum length of sequence to detect palette (empty strings are allowed)
+     * @return {SeqPalette} Palette corresponding to the alphabet of the sequences in the column
+     */
+    private pickUpPalette;
+    /** First try to find column with semType 'alignedSequence'.
+     * Next look for column with data alphabet corresponding to any of the known palettes.
+     * @param {DG.DataFrame} dataFrame
+     * @return {DG.Column} The column we were looking for or null
+     */
+    private pickUpSeqCol;
 }
 //# sourceMappingURL=web-logo.d.ts.map

No alert changes

Improved metrics

Total package byte prevSize

167701

increased by7.11%

Lines of code

1236

increased by7.11%

No dependency changes