@datagrok-libraries/bio - npm Package Compare versions

Comparing version 2.1.4 to 2.2.0

package.json

@@ -8,3 +8,3 @@ {
   "friendlyName": "Datagrok bio library",
-  "version": "2.1.4",
+  "version": "2.2.0",
   "description": "",
@@ -15,3 +15,3 @@ "dependencies": {
     "cash-dom": "latest",
-    "datagrok-api": "^1.4.10",
+    "datagrok-api": "^1.4.11",
     "dayjs": "latest",
@@ -18,0 +18,0 @@ "rxjs": "^6.5.5",

src/viewers/web-logo.d.ts

@@ -13,5 +13,10 @@ import * as DG from 'datagrok-api/dg';
 }
-declare type MonomerFreqs = {
+export declare type MonomerFreqs = {
     [m: string]: number;
 };
+export declare type SeqColStats = {
+    freq: MonomerFreqs;
+    sameLength: boolean;
+};
+export declare type SplitterFunc = (seq: string) => string[];
 export declare class PositionMonomerInfo {
@@ -92,3 +97,9 @@ /** Sequences count with monomer in position
     static pickUpPalette(seqCol: DG.Column, minLength?: number): SeqPalette;
-    static getAlphabetFreqs(seqCol: DG.Column, minLength?: number): MonomerFreqs;
+    /** Stats of sequences with specified splitter func, returns { freq, sameLength }.
+     * @param {DG.Column} seqCol
+     * @param {number} minLength
+     * @param {SplitterFunc} splitter
+     * @return { SeqColStats }, sameLength: boolean } stats of column sequences
+     */
+    static getStats(seqCol: DG.Column, minLength: number, splitter: SplitterFunc): SeqColStats;
     static getAlphabetSimilarity(freq: MonomerFreqs, alphabet: Set<string>, gapSymbol?: string): number;
@@ -101,8 +112,11 @@ /** First try to find column with semType 'alignedSequence'.
     private pickUpSeqCol;
-    private static splitRe;
-    static splitSeqToMonomers(seq: string): string[];
+    private static monomerRe;
+    /** Split sequence for single character monomers, square brackets multichar monomer names or gap symbol.
+     * @param {any} seq object with sequence
+     * @return {string[]} array of monomers
+     */
+    static splitterAsFasta(seq: any): string[];
     /** Only some of the synonyms. These were obtained from the clustered oligopeptide dataset. */
     private static aaSynonyms;
 }
-export {};
 //# sourceMappingURL=web-logo.d.ts.map

No alert changes

Improved metrics

Total package byte prevSize

216945

increased by0.26%

Lines of code

1584

increased by0.83%

Dependency changes

• Updateddatagrok-api@^1.4.11