@datagrok-libraries/bio - npm Package Compare versions

Comparing version 2.4.1 to 2.4.2

package.json

@@ -8,3 +8,3 @@ {
   "friendlyName": "Datagrok bio library",
-  "version": "2.4.1",
+  "version": "2.4.2",
   "description": "",
@@ -11,0 +11,0 @@ "dependencies": {

src/seq-palettes.d.ts

@@ -8,4 +8,4 @@ export interface SeqPalette {
 export declare class SeqPaletteBase implements SeqPalette {
-    /** Palette with shades of primary colors
-     */
+    static undefinedColor: string;
+    /** Palette with shades of primary colors */
     static colourPalette: {
@@ -15,3 +15,3 @@ [key: string]: string[];
     protected static makePalette(dt: [string[], string][], simplified?: boolean, PaletteType?: typeof SeqPaletteBase): SeqPaletteBase;
-    private _palette;
+    private readonly _palette;
     constructor(palette: {
@@ -18,0 +18,0 @@ [m: string]: string;

src/seq-palettes.js

@@ -20,4 +20,4 @@ export class SeqPaletteBase {
 }
-/** Palette with shades of primary colors
- */
+SeqPaletteBase.undefinedColor = 'rgb(100,100,100)';
+/** Palette with shades of primary colors */
 SeqPaletteBase.colourPalette = {
@@ -45,2 +45,2 @@ 'orange': ['rgb(255,187,120)', 'rgb(245,167,100)', 'rgb(235,137,70)', 'rgb(205, 111, 71)'],
 };
-//# 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+//# 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src/viewers/web-logo.d.ts

@@ -54,2 +54,3 @@ import * as DG from 'datagrok-api/dg';
     private seqCol;
+    private splitter;
     private positions;
@@ -106,8 +107,3 @@ private rowsMasked;
     static getAlphabetSimilarity(freq: MonomerFreqs, alphabet: Set<string>, gapSymbol?: string): number;
-    /** First try to find column with semType 'alignedSequence'.
-     * Next look for column with data alphabet corresponding to any of the known palettes.
-     * @param {DG.DataFrame} dataFrame
-     * @return {DG.Column} The column we were looking for or null
-     */
-    private pickUpSeqCol;
+    static pickUpSeqCol2(df: DG.DataFrame): DG.Column | null;
     private static monomerRe;
@@ -124,3 +120,7 @@ /** Split sequence for single character monomers, square brackets multichar monomer names or gap symbol.
     static getSplitterWithSeparator(separator: string): SplitterFunc;
-    /** Get splitter method to split sequences to monomers */
+    /** Get splitter method to split sequences to monomers
+     * @param {string} units
+     * @param {string} separator
+     * @return {SplitterFunc}
+     */
     static getSplitter(units: string, separator: string): SplitterFunc;
@@ -127,0 +127,0 @@ /** Only some of the synonyms. These were obtained from the clustered oligopeptide dataset. */

No alert changes

Improved metrics

Total package byte prevSize

223859

increased by1.55%

Lines of code

1639

increased by1.49%

No dependency changes