@datagrok-libraries/bio - npm Package Compare versions

Comparing version 2.8.7 to 2.8.8

package.json

@@ -8,3 +8,3 @@ {
   "friendlyName": "Datagrok bio library",
-  "version": "2.8.7",
+  "version": "2.8.8",
   "description": "",
@@ -11,0 +11,0 @@ "dependencies": {

src/utils/fasta-handler.d.ts

@@ -7,3 +7,2 @@ import * as DG from 'datagrok-api/dg';
     private _sequencesArray;
-    private _columnsParsed;
     get descriptionsArray(): string[];
@@ -10,0 +9,0 @@ get sequencesArray(): string[];

src/utils/fasta-handler.js

@@ -8,17 +8,8 @@ import * as DG from 'datagrok-api/dg';
         this._sequencesArray = []; // parsed FASTA sequeces
-        this._columnsParsed = false;
         this._fileContent = fileContent;
+        this.parseColumns();
     }
-    get descriptionsArray() {
-        if (this._columnsParsed)
-            return this._descriptionsArray;
-        else
-            throw new Error('Run parseColumns first');
-    }
-    get sequencesArray() {
-        if (this._columnsParsed)
-            return this._sequencesArray;
-        else
-            throw new Error('Run parseColumns first');
-    }
+    // private _columnsParsed: boolean = false;
+    get descriptionsArray() { return this._descriptionsArray; }
+    get sequencesArray() { return this._sequencesArray; }
     /**
@@ -39,3 +30,2 @@ * Helper method to parse a macromolecule from a FASTA file (string)
     parseColumns() {
-        // parse description and content
         const regex = /^>(.*)$/gm; // match 'description' lines starting with >
@@ -52,3 +42,3 @@ let startOfSequence = 0;
         this._sequencesArray.push(this.parseMacromolecule(startOfSequence, -1));
-        this._columnsParsed = true;
+        // this._columnsParsed = true;
     }
@@ -61,3 +51,2 @@ /**
     importFasta() {
-        this.parseColumns();
         const descriptionsArrayCol = DG.Column.fromStrings('description', this.descriptionsArray);
@@ -74,2 +63,2 @@ const sequenceCol = DG.Column.fromStrings('sequence', this.sequencesArray);
 }
-//# sourceMappingURL=data:application/json;base64,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+//# 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No alert changes

Worsened metrics

Total package byte prevSize

307619

decreased by-0.28%

Lines of code

2291

decreased by-0.52%

No dependency changes