@gmod/bam - npm Package Compare versions

Comparing version 1.0.13 to 1.0.14

CHANGELOG.md

@@ -0,1 +1,8 @@
+<a name="1.0.14"></a>
+## [1.0.14](https://github.com/GMOD/bam-js/compare/v1.0.13...v1.0.14) (2019-01-04)
+
+
+
+- Add hasRefSeq for CSI indexes
+
 <a name="1.0.13"></a>
@@ -2,0 +9,0 @@ ## [1.0.13](https://github.com/GMOD/bam-js/compare/v1.0.12...v1.0.13) (2018-12-25)

dist/csi.js

@@ -428,2 +428,47 @@ 'use strict';
     /**
+     * @param {number} seqId
+     * @returns {Promise} true if the index contains entries for
+     * the given reference sequence ID, false otherwise
+     */
+
+  }, {
+    key: 'hasRefSeq',
+    value: function () {
+      var _ref5 = (0, _asyncToGenerator3.default)( /*#__PURE__*/_regenerator2.default.mark(function _callee4(seqId) {
+        return _regenerator2.default.wrap(function _callee4$(_context4) {
+          while (1) {
+            switch (_context4.prev = _context4.next) {
+              case 0:
+                _context4.next = 2;
+                return this.parse();
+
+              case 2:
+                _context4.t1 = seqId;
+                _context4.t0 = _context4.sent.indices[_context4.t1];
+
+                if (_context4.t0) {
+                  _context4.next = 6;
+                  break;
+                }
+
+                _context4.t0 = {};
+
+              case 6:
+                return _context4.abrupt('return', !!_context4.t0.binIndex);
+
+              case 7:
+              case 'end':
+                return _context4.stop();
+            }
+          }
+        }, _callee4, this);
+      }));
+
+      function hasRefSeq(_x5) {
+        return _ref5.apply(this, arguments);
+      }
+
+      return hasRefSeq;
+    }()
+    /**
      * calculate the list of bins that may overlap with region [beg,end) (zero-based half-open)
@@ -430,0 +475,0 @@ * @returns {Array[number]}

package.json

 {
   "name": "@gmod/bam",
-  "version": "1.0.13",
+  "version": "1.0.14",
   "description": "Parser for BAM and BAM index (bai) files",
@@ -5,0 +5,0 @@ "license": "MIT",

New alerts

License Policy Violation

License

This package is not allowed per your license policy. Review the package's license to ensure compliance.

Found 1 instance in 1 package

Fixed alerts

License Policy Violation

License

This package is not allowed per your license policy. Review the package's license to ensure compliance.

Found 1 instance in 1 package

Improved metrics

Total package byte prevSize

132601

increased by1.25%

Lines of code

2137

increased by1.76%

No dependency changes