@gmod/bam - npm Package Compare versions

Comparing version 1.0.32 to 1.0.33

CHANGELOG.md

@@ -0,1 +1,8 @@
+<a name="1.0.33"></a>
+## [1.0.33](https://github.com/GMOD/bam-js/compare/v1.0.32...v1.0.33) (2020-01-24)
+
+
+
+- Perform decoding of entire chunk up front to aid caching, reverts change in 1.0.29
+
 <a name="1.0.32"></a>
@@ -2,0 +9,0 @@ ## [1.0.32](https://github.com/GMOD/bam-js/compare/v1.0.31...v1.0.32) (2019-11-16)

dist/bai.js

@@ -53,3 +53,3 @@ "use strict";
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i] != null ? arguments[i] : {}; if (i % 2) { ownKeys(source, true).forEach(function (key) { (0, _defineProperty3.default)(target, key, source[key]); }); } else if (_getOwnPropertyDescriptors.default) { (0, _defineProperties.default)(target, (0, _getOwnPropertyDescriptors.default)(source)); } else { ownKeys(source).forEach(function (key) { (0, _defineProperty2.default)(target, key, (0, _getOwnPropertyDescriptor.default)(source, key)); }); } } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i] != null ? arguments[i] : {}; if (i % 2) { ownKeys(Object(source), true).forEach(function (key) { (0, _defineProperty3.default)(target, key, source[key]); }); } else if (_getOwnPropertyDescriptors.default) { (0, _defineProperties.default)(target, (0, _getOwnPropertyDescriptors.default)(source)); } else { ownKeys(Object(source)).forEach(function (key) { (0, _defineProperty2.default)(target, key, (0, _getOwnPropertyDescriptor.default)(source, key)); }); } } return target; }
 
@@ -56,0 +56,0 @@ var BAI_MAGIC = 21578050; // BAI\1

dist/bamFile.d.ts

@@ -70,3 +70,3 @@ /// <reference types="node" />
     }>;
-    readBamFeatures(ba: Buffer, cpositions: number[], dpositions: number[], chunk: Chunk, chrId?: number, min?: number, max?: number): Promise<BAMFeature[]>;
+    readBamFeatures(ba: Buffer, cpositions: number[], dpositions: number[], chunk: Chunk): Promise<BAMFeature[]>;
     hasRefSeq(seqName: string): Promise<boolean>;
@@ -73,0 +73,0 @@ lineCount(seqName: string): Promise<number>;

dist/virtualOffset.js

@@ -48,8 +48,12 @@ "use strict";
 
+      for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
+        args[_key] = arguments[_key];
+      }
+
       for (; !min; i += 1) {
-        min = i < 0 || arguments.length <= i ? undefined : arguments[i];
+        min = args[i];
       }
 
-      for (; i < arguments.length; i += 1) {
-        if (min.compareTo(i < 0 || arguments.length <= i ? undefined : arguments[i]) > 0) min = i < 0 || arguments.length <= i ? undefined : arguments[i];
+      for (; i < args.length; i += 1) {
+        if (min.compareTo(args[i]) > 0) min = args[i];
       }
@@ -71,2 +75,2 @@
 }
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package.json

 {
   "name": "@gmod/bam",
-  "version": "1.0.32",
+  "version": "1.0.33",
   "description": "Parser for BAM and BAM index (bai) files",
@@ -5,0 +5,0 @@ "license": "MIT",

New alerts

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License

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Found 1 instance in 1 package

Fixed alerts

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License

This package is not allowed per your license policy. Review the package's license to ensure compliance.

Found 1 instance in 1 package

Improved metrics

Total package byte prevSize

285612

increased by0.35%

Lines of code

3177

increased by0.38%

No dependency changes