@gmod/bam - npm Package Compare versions

Comparing version 1.1.16 to 1.1.17

CHANGELOG.md

@@ -1,5 +0,9 @@
-## [1.1.16](https://github.com/GMOD/bam-js/compare/v1.1.15...v1.1.16) (2022-03-30)
+## [1.1.17](https://github.com/GMOD/bam-js/compare/v1.1.16...v1.1.17) (2022-07-18)
 
 
 
+- Bump devDeps and generic-filehandle to 3.0.0
+
+## [1.1.16](https://github.com/GMOD/bam-js/compare/v1.1.15...v1.1.16) (2022-03-30)
+
 - Add src directory for better source maps
@@ -9,4 +13,2 @@
 
-
-
 - Fix for htsget failing with message 'input must be buffer, number, or string, received object'
@@ -13,0 +15,0 @@ - Speed improvement by caching chunks of features

dist/csi.d.ts

@@ -31,6 +31,6 @@ /// <reference types="node" />
     /**
-     * calculate the list of bins that may overlap with region [beg,end) (zero-based half-open)
-     * @returns {Array[number]}
+     * calculate the list of bins that may overlap with region [beg,end)
+     * (zero-based half-open)
      */
     reg2bins(beg: number, end: number): number[][];
 }

dist/csi.js

@@ -280,6 +280,3 @@ "use strict";
                         indexData = _b.sent();
-                        if (!indexData) {
-                            return [2 /*return*/, []];
-                        }
-                        ba = indexData.indices[refId];
+                        ba = indexData === null || indexData === void 0 ? void 0 : indexData.indices[refId];
                         if (!ba) {
@@ -309,4 +306,4 @@ return [2 /*return*/, []];
     /**
-     * calculate the list of bins that may overlap with region [beg,end) (zero-based half-open)
-     * @returns {Array[number]}
+     * calculate the list of bins that may overlap with region [beg,end)
+     * (zero-based half-open)
      */
@@ -313,0 +310,0 @@ CSI.prototype.reg2bins = function (beg, end) {

esm/csi.d.ts

@@ -31,6 +31,6 @@ /// <reference types="node" />
     /**
-     * calculate the list of bins that may overlap with region [beg,end) (zero-based half-open)
-     * @returns {Array[number]}
+     * calculate the list of bins that may overlap with region [beg,end)
+     * (zero-based half-open)
      */
     reg2bins(beg: number, end: number): number[][];
 }

esm/csi.js

@@ -154,6 +154,3 @@ import Long from 'long';
         const indexData = await this.parse(opts);
-        if (!indexData) {
-            return [];
-        }
-        const ba = indexData.indices[refId];
+        const ba = indexData === null || indexData === void 0 ? void 0 : indexData.indices[refId];
         if (!ba) {
@@ -178,4 +175,4 @@ return [];
     /**
-     * calculate the list of bins that may overlap with region [beg,end) (zero-based half-open)
-     * @returns {Array[number]}
+     * calculate the list of bins that may overlap with region [beg,end)
+     * (zero-based half-open)
      */
@@ -182,0 +179,0 @@ reg2bins(beg, end) {

package.json

 {
   "name": "@gmod/bam",
-  "version": "1.1.16",
+  "version": "1.1.17",
   "description": "Parser for BAM and BAM index (bai) files",
@@ -42,7 +42,7 @@ "license": "MIT",
   "dependencies": {
-    "@gmod/bgzf-filehandle": "^1.3.3",
+    "@gmod/bgzf-filehandle": "^1.4.4",
     "abortable-promise-cache": "^1.5.0",
     "buffer-crc32": "^0.2.13",
     "cross-fetch": "^3.0.2",
-    "generic-filehandle": "^2.0.0",
+    "generic-filehandle": "^3.0.0",
     "long": "^4.0.0",
@@ -54,18 +54,18 @@ "object.entries-ponyfill": "^1.0.1",
     "@types/buffer-crc32": "^0.2.0",
-    "@types/jest": "^27.4.1",
-    "@types/long": "^4.0.0",
-    "@types/node": "^17.0.21",
+    "@types/jest": "^28.1.6",
+    "@types/long": "^4.0.2",
+    "@types/node": "^18.0.6",
     "@types/quick-lru": "^2.0.0",
-    "@typescript-eslint/eslint-plugin": "^5.14.0",
-    "@typescript-eslint/parser": "^5.14.0",
-    "eslint": "^8.11.0",
+    "@typescript-eslint/eslint-plugin": "^5.30.7",
+    "@typescript-eslint/parser": "^5.30.7",
+    "eslint": "^8.20.0",
     "eslint-config-prettier": "^8.5.0",
-    "eslint-plugin-import": "^2.25.4",
-    "eslint-plugin-prettier": "^4.0.0",
-    "jest": "^27.5.1",
-    "prettier": "^2.4.1",
+    "eslint-plugin-import": "^2.26.0",
+    "eslint-plugin-prettier": "^4.2.1",
+    "jest": "^28.1.3",
+    "prettier": "^2.7.1",
     "rimraf": "^3.0.2",
     "standard-changelog": "^2.0.27",
-    "ts-jest": "^27.1.3",
-    "typescript": "^4.6.2"
+    "ts-jest": "^28.0.7",
+    "typescript": "^4.7.4"
   },
@@ -72,0 +72,0 @@ "publishConfig": {

src/csi.ts

@@ -191,6 +191,3 @@ import Long from 'long'
     const indexData = await this.parse(opts)
-    if (!indexData) {
-      return []
-    }
-    const ba = indexData.indices[refId]
+    const ba = indexData?.indices[refId]
     if (!ba) {
@@ -201,3 +198,3 @@ return []
     const overlappingBins = this.reg2bins(min, max) // List of bin #s that overlap min, max
-    const chunks: Chunk[] = []
+    const chunks = []
 
@@ -220,4 +217,4 @@ // Find chunks in overlapping bins.  Leaf bins (< 4681) are not pruned
   /**
-   * calculate the list of bins that may overlap with region [beg,end) (zero-based half-open)
-   * @returns {Array[number]}
+   * calculate the list of bins that may overlap with region [beg,end)
+   * (zero-based half-open)
    */
@@ -224,0 +221,0 @@ reg2bins(beg: number, end: number) {

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Found 1 instance in 1 package

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Worsened metrics

Total package byte prevSize

405748

decreased by-0.05%

Lines of code

6974

decreased by-0.13%

Dependency changes

• + Addedes6-promisify@7.0.0(transitive)

• - Removedfile-uri-to-path@2.0.0(transitive)

• - Removedgeneric-filehandle@2.2.3(transitive)

• Updated@gmod/bgzf-filehandle@^1.4.4

• Updatedgeneric-filehandle@^3.0.0