@gmod/cram - npm Package Compare versions

Comparing version 1.5.7 to 1.5.8

dist/craiIndex.js

@@ -313,3 +313,3 @@ "use strict";
 
-                searchPosition = Math.round((upperBound + lowerBound) / 2);
+                searchPosition = Math.floor((upperBound + lowerBound) / 2);
                 nextSearchDirection = compare(seqEntries[searchPosition]);
@@ -316,0 +316,0 @@

package.json

 {
   "name": "@gmod/cram",
-  "version": "1.5.7",
+  "version": "1.5.8",
   "description": "read CRAM files with pure Javascript",
@@ -5,0 +5,0 @@ "license": "MIT",

README.md

@@ -28,3 +28,3 @@ # @gmod/cram
 //Use indexedfasta library for seqFetch, if using local file (see below)
-const { IndexedFasta, BgzipIndexedFasta } = require('@gmod/indexedfasta') 
+const { IndexedFasta, BgzipIndexedFasta } = require('@gmod/indexedfasta')
 
@@ -45,7 +45,7 @@
   seqFetch: async (seqId, start, end) => {
-    // note: 
+    // note:
     // * seqFetch should return a promise for a string, in this instance retrieved from IndexedFasta
     // * we use start-1 because cram-js uses 1-based but IndexedFasta uses 0-based coordinates
     // * the seqId is a numeric identifier
-    return seq = await t.getSequence(seqId, start-1, end)
+    return t.getSequence(seqId, start-1, end)
     }
@@ -57,3 +57,3 @@ },
 // example of fetching records from an indexed CRAM file.
-// NOTE: only numeric IDs for the reference sequence are accepted. 
+// NOTE: only numeric IDs for the reference sequence are accepted.
 // For indexedfasta the numeric ID is the order in which the sequence names appear in the header
@@ -60,0 +60,0 @@

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