@radicalimaging/healthlakestore

AWS HealthLake Store

This tool is based on static-dicomweb, and is designed to uplaod DICOM part 10 files to an AWS healthlake data store, run the generation on it, and then download the results to a local static-dicomweb service. The local files can then be indexed and used to generate/update DICOMweb servers.

Prerequisites

A local install/link of static-dicomweb is required for running the tools

A command line install of dcm4che5 is also required (eg dcm2dcm is needed to convert to LEI format)

A static-wado.json5 configuration file is required in the user's home directory.

Command Options

Generally the command is run as: node bin\healthlakestore, with the following sequence being used

• node bin\healthlakestore lei <DICOM-DIR-OR-FILE> -d curie -n <NAME>
• Converts the input, storing it into the ~/curie/lei output folder
• node bin\healthlakestore upload <NAME> -d curie
• Uploaded ~/curie/ to AWS S3
• node bin\healthlakestore convert <NAME> -d curie -j <JOBNAME>
• Initiates the healthlake conversion job, calling it JOBNAME, and taking the input from S3 in the lei/ directory.
• node bin\healthlakestore download <JOBNAME> -d curie
• Downloads the files locally to ~/curie/studies/ and creates the index file. May need to be run multiple times until the conversion is complete.
• `mkdicomweb index -o ~/curie
• Generates a studies index in the curie job area.