@vitessce/constants-internal - npm Package Compare versions

Comparing version 3.4.9 to 3.4.10

dist-tsc/constant-relationships.d.ts

@@ -20,4 +20,5 @@ /**
         zip: string;
+        h5ad: string;
     };
 };
 //# sourceMappingURL=constant-relationships.d.ts.map

dist-tsc/constant-relationships.js

@@ -126,33 +126,44 @@ import { FileType, DataType, CoordinationType } from './constants.js';
         zip: FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR_ZIP,
+        h5ad: FileType.OBS_FEATURE_MATRIX_ANNDATA_H5AD,
     },
     [FileType.OBS_FEATURE_COLUMNS_ANNDATA_ZARR]: {
         zip: FileType.OBS_FEATURE_COLUMNS_ANNDATA_ZARR_ZIP,
+        h5ad: FileType.OBS_FEATURE_COLUMNS_ANNDATA_H5AD,
     },
     [FileType.OBS_SETS_ANNDATA_ZARR]: {
         zip: FileType.OBS_SETS_ANNDATA_ZARR_ZIP,
+        h5ad: FileType.OBS_SETS_ANNDATA_H5AD,
     },
     [FileType.OBS_EMBEDDING_ANNDATA_ZARR]: {
         zip: FileType.OBS_EMBEDDING_ANNDATA_ZARR_ZIP,
+        h5ad: FileType.OBS_EMBEDDING_ANNDATA_H5AD,
     },
     [FileType.OBS_SPOTS_ANNDATA_ZARR]: {
         zip: FileType.OBS_SPOTS_ANNDATA_ZARR_ZIP,
+        h5ad: FileType.OBS_SPOTS_ANNDATA_H5AD,
     },
     [FileType.OBS_POINTS_ANNDATA_ZARR]: {
         zip: FileType.OBS_POINTS_ANNDATA_ZARR_ZIP,
+        h5ad: FileType.OBS_POINTS_ANNDATA_H5AD,
     },
     [FileType.OBS_LOCATIONS_ANNDATA_ZARR]: {
         zip: FileType.OBS_LOCATIONS_ANNDATA_ZARR_ZIP,
+        h5ad: FileType.OBS_LOCATIONS_ANNDATA_H5AD,
     },
     [FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR]: {
         zip: FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR_ZIP,
+        h5ad: FileType.OBS_SEGMENTATIONS_ANNDATA_H5AD,
     },
     [FileType.OBS_LABELS_ANNDATA_ZARR]: {
         zip: FileType.OBS_LABELS_ANNDATA_ZARR_ZIP,
+        h5ad: FileType.OBS_LABELS_ANNDATA_H5AD,
     },
     [FileType.FEATURE_LABELS_ANNDATA_ZARR]: {
         zip: FileType.FEATURE_LABELS_ANNDATA_ZARR_ZIP,
+        h5ad: FileType.FEATURE_LABELS_ANNDATA_H5AD,
     },
     [FileType.SAMPLE_EDGES_ANNDATA_ZARR]: {
         zip: FileType.SAMPLE_EDGES_ANNDATA_ZARR_ZIP,
+        h5ad: FileType.SAMPLE_EDGES_ANNDATA_H5AD,
     },
 };

dist-tsc/constants.d.ts

@@ -51,2 +51,3 @@ /**
     ANNDATA_ZARR_ZIP: string;
+    ANNDATA_H5AD: string;
     SPATIALDATA_ZARR: string;
@@ -88,2 +89,13 @@ OBS_EMBEDDING_CSV: string;
     SAMPLE_EDGES_ANNDATA_ZARR_ZIP: string;
+    OBS_FEATURE_MATRIX_ANNDATA_H5AD: string;
+    OBS_FEATURE_COLUMNS_ANNDATA_H5AD: string;
+    OBS_SETS_ANNDATA_H5AD: string;
+    OBS_EMBEDDING_ANNDATA_H5AD: string;
+    OBS_SPOTS_ANNDATA_H5AD: string;
+    OBS_POINTS_ANNDATA_H5AD: string;
+    OBS_LOCATIONS_ANNDATA_H5AD: string;
+    OBS_SEGMENTATIONS_ANNDATA_H5AD: string;
+    OBS_LABELS_ANNDATA_H5AD: string;
+    FEATURE_LABELS_ANNDATA_H5AD: string;
+    SAMPLE_EDGES_ANNDATA_H5AD: string;
     IMAGE_SPATIALDATA_ZARR: string;
@@ -254,2 +266,6 @@ LABELS_SPATIALDATA_ZARR: string;
 };
+export declare const DescriptionType: {
+    PLAIN: string;
+    MARKDOWN: string;
+};
 //# sourceMappingURL=constants.d.ts.map

dist-tsc/constants.js

@@ -52,2 +52,3 @@ /**
     ANNDATA_ZARR_ZIP: 'anndata.zarr.zip',
+    ANNDATA_H5AD: 'anndata.h5ad',
     SPATIALDATA_ZARR: 'spatialdata.zarr',
@@ -93,2 +94,14 @@ // Atomic file types
     SAMPLE_EDGES_ANNDATA_ZARR_ZIP: 'sampleEdges.anndata.zarr.zip',
+    // AnnData - h5ad via reference spec
+    OBS_FEATURE_MATRIX_ANNDATA_H5AD: 'obsFeatureMatrix.anndata.h5ad',
+    OBS_FEATURE_COLUMNS_ANNDATA_H5AD: 'obsFeatureColumns.anndata.h5ad',
+    OBS_SETS_ANNDATA_H5AD: 'obsSets.anndata.h5ad',
+    OBS_EMBEDDING_ANNDATA_H5AD: 'obsEmbedding.anndata.h5ad',
+    OBS_SPOTS_ANNDATA_H5AD: 'obsSpots.anndata.h5ad',
+    OBS_POINTS_ANNDATA_H5AD: 'obsPoints.anndata.h5ad',
+    OBS_LOCATIONS_ANNDATA_H5AD: 'obsLocations.anndata.h5ad',
+    OBS_SEGMENTATIONS_ANNDATA_H5AD: 'obsSegmentations.anndata.h5ad',
+    OBS_LABELS_ANNDATA_H5AD: 'obsLabels.anndata.h5ad',
+    FEATURE_LABELS_ANNDATA_H5AD: 'featureLabels.anndata.h5ad',
+    SAMPLE_EDGES_ANNDATA_H5AD: 'sampleEdges.anndata.h5ad',
     // SpatialData
@@ -282,1 +295,5 @@ IMAGE_SPATIALDATA_ZARR: 'image.spatialdata.zarr',
 };
+export const DescriptionType = {
+    PLAIN: 'plain',
+    MARKDOWN: 'markdown',
+};

dist-tsc/index.d.ts

@@ -1,2 +0,2 @@
-export { ViewType, DataType, FileType, CoordinationType, STATUS, } from './constants.js';
+export { ViewType, DataType, FileType, CoordinationType, STATUS, DescriptionType, } from './constants.js';
 export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE, ALT_ZARR_STORE_TYPES, } from './constant-relationships.js';
@@ -3,0 +3,0 @@ export { AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from './coordination.js';

dist-tsc/index.js

@@ -1,4 +0,4 @@
-export { ViewType, DataType, FileType, CoordinationType, STATUS, } from './constants.js';
+export { ViewType, DataType, FileType, CoordinationType, STATUS, DescriptionType, } from './constants.js';
 export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE, ALT_ZARR_STORE_TYPES, } from './constant-relationships.js';
 export { AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from './coordination.js';
 export { default as META_VERSION } from './version.json';

dist-tsc/version.json

 {
     "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
-    "version": "3.4.9",
-    "date": "2024-07-26",
+    "version": "3.4.10",
+    "date": "2024-09-01",
     "branch": "changeset-release/main",
-    "hash": "9582ddcf"
+    "hash": "26b1c2d6"
 }

dist/index.js

@@ -40,2 +40,3 @@ const ViewType = {
   ANNDATA_ZARR_ZIP: "anndata.zarr.zip",
+  ANNDATA_H5AD: "anndata.h5ad",
   SPATIALDATA_ZARR: "spatialdata.zarr",
@@ -81,2 +82,14 @@ // Atomic file types
   SAMPLE_EDGES_ANNDATA_ZARR_ZIP: "sampleEdges.anndata.zarr.zip",
+  // AnnData - h5ad via reference spec
+  OBS_FEATURE_MATRIX_ANNDATA_H5AD: "obsFeatureMatrix.anndata.h5ad",
+  OBS_FEATURE_COLUMNS_ANNDATA_H5AD: "obsFeatureColumns.anndata.h5ad",
+  OBS_SETS_ANNDATA_H5AD: "obsSets.anndata.h5ad",
+  OBS_EMBEDDING_ANNDATA_H5AD: "obsEmbedding.anndata.h5ad",
+  OBS_SPOTS_ANNDATA_H5AD: "obsSpots.anndata.h5ad",
+  OBS_POINTS_ANNDATA_H5AD: "obsPoints.anndata.h5ad",
+  OBS_LOCATIONS_ANNDATA_H5AD: "obsLocations.anndata.h5ad",
+  OBS_SEGMENTATIONS_ANNDATA_H5AD: "obsSegmentations.anndata.h5ad",
+  OBS_LABELS_ANNDATA_H5AD: "obsLabels.anndata.h5ad",
+  FEATURE_LABELS_ANNDATA_H5AD: "featureLabels.anndata.h5ad",
+  SAMPLE_EDGES_ANNDATA_H5AD: "sampleEdges.anndata.h5ad",
   // SpatialData
@@ -271,2 +284,6 @@ IMAGE_SPATIALDATA_ZARR: "image.spatialdata.zarr",
 };
+const DescriptionType = {
+  PLAIN: "plain",
+  MARKDOWN: "markdown"
+};
 const FILE_TYPE_DATA_TYPE_MAPPING = {
@@ -382,33 +399,44 @@ // For new file types
   [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: {
-    zip: FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR_ZIP
+    zip: FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_FEATURE_MATRIX_ANNDATA_H5AD
   },
   [FileType.OBS_FEATURE_COLUMNS_ANNDATA_ZARR]: {
-    zip: FileType.OBS_FEATURE_COLUMNS_ANNDATA_ZARR_ZIP
+    zip: FileType.OBS_FEATURE_COLUMNS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_FEATURE_COLUMNS_ANNDATA_H5AD
   },
   [FileType.OBS_SETS_ANNDATA_ZARR]: {
-    zip: FileType.OBS_SETS_ANNDATA_ZARR_ZIP
+    zip: FileType.OBS_SETS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_SETS_ANNDATA_H5AD
   },
   [FileType.OBS_EMBEDDING_ANNDATA_ZARR]: {
-    zip: FileType.OBS_EMBEDDING_ANNDATA_ZARR_ZIP
+    zip: FileType.OBS_EMBEDDING_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_EMBEDDING_ANNDATA_H5AD
   },
   [FileType.OBS_SPOTS_ANNDATA_ZARR]: {
-    zip: FileType.OBS_SPOTS_ANNDATA_ZARR_ZIP
+    zip: FileType.OBS_SPOTS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_SPOTS_ANNDATA_H5AD
   },
   [FileType.OBS_POINTS_ANNDATA_ZARR]: {
-    zip: FileType.OBS_POINTS_ANNDATA_ZARR_ZIP
+    zip: FileType.OBS_POINTS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_POINTS_ANNDATA_H5AD
   },
   [FileType.OBS_LOCATIONS_ANNDATA_ZARR]: {
-    zip: FileType.OBS_LOCATIONS_ANNDATA_ZARR_ZIP
+    zip: FileType.OBS_LOCATIONS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_LOCATIONS_ANNDATA_H5AD
   },
   [FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR]: {
-    zip: FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR_ZIP
+    zip: FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_SEGMENTATIONS_ANNDATA_H5AD
   },
   [FileType.OBS_LABELS_ANNDATA_ZARR]: {
-    zip: FileType.OBS_LABELS_ANNDATA_ZARR_ZIP
+    zip: FileType.OBS_LABELS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_LABELS_ANNDATA_H5AD
   },
   [FileType.FEATURE_LABELS_ANNDATA_ZARR]: {
-    zip: FileType.FEATURE_LABELS_ANNDATA_ZARR_ZIP
+    zip: FileType.FEATURE_LABELS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.FEATURE_LABELS_ANNDATA_H5AD
   },
   [FileType.SAMPLE_EDGES_ANNDATA_ZARR]: {
-    zip: FileType.SAMPLE_EDGES_ANNDATA_ZARR_ZIP
+    zip: FileType.SAMPLE_EDGES_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.SAMPLE_EDGES_ANNDATA_H5AD
   }
@@ -849,6 +877,6 @@ };
 const note = "This file is autogenerated by .changeset/post-changelog.mjs.";
-const version = "3.4.9";
-const date = "2024-07-26";
+const version = "3.4.10";
+const date = "2024-09-01";
 const branch = "changeset-release/main";
-const hash = "9582ddcf";
+const hash = "26b1c2d6";
 const version$1 = {
@@ -868,2 +896,3 @@ note,
   DataType,
+  DescriptionType,
   FILE_TYPE_DATA_TYPE_MAPPING,
@@ -870,0 +899,0 @@ FileType,

package.json

 {
   "name": "@vitessce/constants-internal",
-  "version": "3.4.9",
+  "version": "3.4.10",
   "author": "Gehlenborg Lab",
@@ -5,0 +5,0 @@ "homepage": "http://vitessce.io",

src/constant-relationships.ts

@@ -131,33 +131,44 @@ import { FileType, DataType, CoordinationType } from './constants.js';
     zip: FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_FEATURE_MATRIX_ANNDATA_H5AD,
   },
   [FileType.OBS_FEATURE_COLUMNS_ANNDATA_ZARR]: {
     zip: FileType.OBS_FEATURE_COLUMNS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_FEATURE_COLUMNS_ANNDATA_H5AD,
   },
   [FileType.OBS_SETS_ANNDATA_ZARR]: {
     zip: FileType.OBS_SETS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_SETS_ANNDATA_H5AD,
   },
   [FileType.OBS_EMBEDDING_ANNDATA_ZARR]: {
     zip: FileType.OBS_EMBEDDING_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_EMBEDDING_ANNDATA_H5AD,
   },
   [FileType.OBS_SPOTS_ANNDATA_ZARR]: {
     zip: FileType.OBS_SPOTS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_SPOTS_ANNDATA_H5AD,
   },
   [FileType.OBS_POINTS_ANNDATA_ZARR]: {
     zip: FileType.OBS_POINTS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_POINTS_ANNDATA_H5AD,
   },
   [FileType.OBS_LOCATIONS_ANNDATA_ZARR]: {
     zip: FileType.OBS_LOCATIONS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_LOCATIONS_ANNDATA_H5AD,
   },
   [FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR]: {
     zip: FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_SEGMENTATIONS_ANNDATA_H5AD,
   },
   [FileType.OBS_LABELS_ANNDATA_ZARR]: {
     zip: FileType.OBS_LABELS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.OBS_LABELS_ANNDATA_H5AD,
   },
   [FileType.FEATURE_LABELS_ANNDATA_ZARR]: {
     zip: FileType.FEATURE_LABELS_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.FEATURE_LABELS_ANNDATA_H5AD,
   },
   [FileType.SAMPLE_EDGES_ANNDATA_ZARR]: {
     zip: FileType.SAMPLE_EDGES_ANNDATA_ZARR_ZIP,
+    h5ad: FileType.SAMPLE_EDGES_ANNDATA_H5AD,
   },
 };

src/constants.ts

@@ -56,2 +56,3 @@ /**
   ANNDATA_ZARR_ZIP: 'anndata.zarr.zip',
+  ANNDATA_H5AD: 'anndata.h5ad',
   SPATIALDATA_ZARR: 'spatialdata.zarr',
@@ -97,2 +98,14 @@ // Atomic file types
   SAMPLE_EDGES_ANNDATA_ZARR_ZIP: 'sampleEdges.anndata.zarr.zip',
+  // AnnData - h5ad via reference spec
+  OBS_FEATURE_MATRIX_ANNDATA_H5AD: 'obsFeatureMatrix.anndata.h5ad',
+  OBS_FEATURE_COLUMNS_ANNDATA_H5AD: 'obsFeatureColumns.anndata.h5ad',
+  OBS_SETS_ANNDATA_H5AD: 'obsSets.anndata.h5ad',
+  OBS_EMBEDDING_ANNDATA_H5AD: 'obsEmbedding.anndata.h5ad',
+  OBS_SPOTS_ANNDATA_H5AD: 'obsSpots.anndata.h5ad',
+  OBS_POINTS_ANNDATA_H5AD: 'obsPoints.anndata.h5ad',
+  OBS_LOCATIONS_ANNDATA_H5AD: 'obsLocations.anndata.h5ad',
+  OBS_SEGMENTATIONS_ANNDATA_H5AD: 'obsSegmentations.anndata.h5ad',
+  OBS_LABELS_ANNDATA_H5AD: 'obsLabels.anndata.h5ad',
+  FEATURE_LABELS_ANNDATA_H5AD: 'featureLabels.anndata.h5ad',
+  SAMPLE_EDGES_ANNDATA_H5AD: 'sampleEdges.anndata.h5ad',
   // SpatialData
@@ -288,1 +301,6 @@ IMAGE_SPATIALDATA_ZARR: 'image.spatialdata.zarr',
 };
+
+export const DescriptionType = {
+  PLAIN: 'plain',
+  MARKDOWN: 'markdown',
+};

src/index.ts

 export {
-  ViewType, DataType, FileType, CoordinationType, STATUS,
+  ViewType, DataType, FileType, CoordinationType, STATUS, DescriptionType,
 } from './constants.js';
@@ -4,0 +4,0 @@ export {

src/version.json

 {
   "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
-  "version": "3.4.9",
-  "date": "2024-07-26",
+  "version": "3.4.10",
+  "date": "2024-09-01",
   "branch": "changeset-release/main",
-  "hash": "9582ddcf"
+  "hash": "26b1c2d6"
 }

No alert changes

Improved metrics

Total package byte prevSize

129192

increased by3.78%

Lines of code

3081

increased by3.42%

No dependency changes