bioinformatics-parser - npm Package Compare versions

Comparing version 1.0.0 to 1.1.0

lib/fasta.js

@@ -8,3 +8,3 @@ "use strict";
 exports.reverseComplement = reverseComplement;
-exports.fastaToString = fastaToString;
+exports.stringify = stringify;
 exports.parse = parse;
@@ -22,3 +22,3 @@ exports.isAllowed = isAllowed;
  */
-
+var LINE_LENGTH = 70;
 /**
@@ -42,2 +42,3 @@ * @typedef {Object} Fasta
  */
+
 function realignFasta(fasta, sequence) {
@@ -99,3 +100,3 @@ var index = fasta.data.indexOf(sequence);
 /**
- * @param {Fasta} fasta
+ * @param {Fasta|Fasta[]} fasta
  * @returns {string} fasta file string
@@ -105,4 +106,10 @@ */
 
-function fastaToString(fasta) {
-  var LINE_LENGTH = 70;
+function stringify(fasta) {
+  if (Array.isArray(fasta)) return fasta.map(function (s) {
+    return stringifySequence(s);
+  }).join('\n');
+  return stringifySequence(fasta);
+}
+
+function stringifySequence(fasta) {
   var result = '>' + fasta.description + '\n';
@@ -109,0 +116,0 @@ var i;

package.json

 {
   "name": "bioinformatics-parser",
-  "version": "1.0.0",
+  "version": "1.1.0",
   "description": ".fasta and .fastq parsers",
@@ -5,0 +5,0 @@ "main": "./lib/index.js",

src/fasta.js

@@ -5,3 +5,5 @@ /*
 
+const LINE_LENGTH = 70
 
+
 /**
@@ -68,8 +70,12 @@ * @typedef {Object} Fasta
 /**
- * @param {Fasta} fasta
+ * @param {Fasta|Fasta[]} fasta
  * @returns {string} fasta file string
  */
-export function fastaToString(fasta) {
-  const LINE_LENGTH = 70
+export function stringify(fasta) {
+  if (Array.isArray(fasta))
+    return fasta.map(s => stringifySequence(s)).join('\n')
+  return stringifySequence(fasta)
+}
 
+function stringifySequence(fasta) {
   let result = '>' + fasta.description + '\n'
@@ -76,0 +82,0 @@

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Improved metrics

Total package byte prevSize

110295

increased by0.31%

Lines of code

824

increased by1.35%

No dependency changes