bionode-bwa - npm Package Compare versions

Comparing version 0.0.5 to 0.0.6

cli.js

@@ -16,4 +16,24 @@ #!/usr/bin/env node
 var operation = bwa(operationArgs)
-operation(filenames)
-.on('data', console.log)
-.on('error', console.log)
+
+if (!process.stdin.isTTY) {
+  process.stdin.on('data', function(data) {
+    var data = data.trim().replace(/['"]/g, '')
+    if (data === '') { return }
+    filenames.push(data)
+    operation(filenames).pipe(JSONstringify()).pipe(process.stdout)
+  })
+}
+else {
+  operation(filenames).pipe(JSONstringify()).pipe(process.stdout)
+}
+
+function JSONstringify() {
+  var stream = through.obj(transform)
+  return stream
+  function transform(obj, enc, next) {
+    var data = JSON.stringify(obj).trim()
+    if (data === '') { return next() }
+    this.push(data + '\n')
+    next()
+  }
+}

lib/bionode-bwa.js

@@ -117,3 +117,3 @@ // # bionode-bwa
         var filenameLC = filename.toLowerCase()
-        if (filenameLC.match(/\.(fasta|fa$|fa.gz$)/)) { reference = filename }
+        if (filenameLC.match(/\.(fasta|fa$|fa.gz$|fna$|fna.gz$)/)) { reference = filename }
         else if (filenameLC.match(/\.(fastq|fq$|fq.gz$)/)) { sequences.push(filename) }
@@ -120,0 +120,0 @@ else if (filenameLC.match(/\.(sam)/)) { sam = filename }

package.json

 {
   "name": "bionode-bwa",
   "description": "A Node.js wrapper for the Burrow-Wheeler Aligner (BWA).",
-  "version": "0.0.5",
+  "version": "0.0.6",
   "homepage": "http://github.com/bionode/bionode-bwa",
@@ -6,0 +6,0 @@ "repository": {

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Improved metrics

Total package byte prevSize

1163584

increased by189.84%

Number of package files

83

increased by295.24%

Lines of code

1681

increased by65.45%

Worsened metrics

Number of low license alerts

3

increased byInfinity%

License quality

70

decreased by-30%

No dependency changes