brukerconverter - npm Package Compare versions

Comparing version 6.0.1 to 6.0.2-pre.1673538890

lib/index.js

@@ -563,2 +563,3 @@ 'use strict';
  * @param {boolean} [options.xy] - if true, spectra data is a object with x and y
+ * @param {boolean} [options.keepFiles] - if true, the fileCollectionItems will be saved in source.
  * @param {boolean} [options.keepSpectra=false] - for 2D should we keep the spectra or just the matrix ?
@@ -584,2 +585,5 @@ * @param {RegExp} [options.keepRecordsRegExp='\/.*\/'] - regular expresion to parse the metadata of the spectrum.
     }
+    if (options.keepFiles) {
+      result.source.files = brukerFiles.fileCollectionItems;
+    }
     // todo we could as well keep the FileList at this level if
@@ -592,5 +596,5 @@ // we want to keep the original data
   if (result.meta.GRPDLY) {
-    result.meta.GRPDLY = Number(result.meta.GRPDLY);
-    result.meta.DSPFVS = Number(result.meta.DSPFVS);
-    result.meta.DECIM = Number(result.meta.DECIM);
+    maybeAdd(result.meta, 'DSPFVS', result.meta.DSPFVS);
+    maybeAdd(result.meta, 'GRPDLY', result.meta.GRPDLY);
+    maybeAdd(result.meta, 'DECIM', result.meta.DECIM);
   }
@@ -623,2 +627,21 @@
 
+function maybeAdd(obj, name, value) {
+  if (value === undefined) return;
+  if (Array.isArray(value)) {
+    obj[name] = value.map(cleanValue);
+  } else {
+    obj[name] = [cleanValue(value)];
+  }
+}
+
+function cleanValue(value) {
+  if (typeof value === 'string') {
+    if (value.startsWith('<') && value.endsWith('>')) {
+      value = value.substring(1, value.length - 1);
+    }
+    value = value.trim();
+  }
+  return value;
+}
+
 /**
@@ -651,3 +674,4 @@ *
 exports.convertFileCollection = convertFileCollection;
+exports.convertOneExperiment = convertOneExperiment;
 exports.convertZip = convertZip;
 exports.groupByExperiments = groupByExperiments;

package.json

 {
   "name": "brukerconverter",
-  "version": "6.0.1",
+  "version": "6.0.2-pre.1673538890",
   "description": "Parse and convert Bruker raw data",
@@ -53,2 +53,2 @@ "main": "lib/index.js",
   }
-}
+}

src/index.js

 export { convertZip } from './helpers/convertZip';
+export { convertOneExperiment } from './util/convertOneExperiment';
 export { convertFileCollection } from './convertFileCollection';
 export { groupByExperiments } from './groupByExperiments';

src/util/convertOneExperiment.js

@@ -10,2 +10,3 @@ import { convert1D } from './convert1D';
  * @param {boolean} [options.xy] - if true, spectra data is a object with x and y
+ * @param {boolean} [options.keepFiles] - if true, the fileCollectionItems will be saved in source.
  * @param {boolean} [options.keepSpectra=false] - for 2D should we keep the spectra or just the matrix ?
@@ -31,2 +32,5 @@ * @param {RegExp} [options.keepRecordsRegExp='\/.*\/'] - regular expresion to parse the metadata of the spectrum.
     }
+    if (options.keepFiles) {
+      result.source.files = brukerFiles.fileCollectionItems;
+    }
     // todo we could as well keep the FileList at this level if
@@ -39,5 +43,5 @@ // we want to keep the original data
   if (result.meta.GRPDLY) {
-    result.meta.GRPDLY = Number(result.meta.GRPDLY);
-    result.meta.DSPFVS = Number(result.meta.DSPFVS);
-    result.meta.DECIM = Number(result.meta.DECIM);
+    maybeAdd(result.meta, 'DSPFVS', result.meta.DSPFVS);
+    maybeAdd(result.meta, 'GRPDLY', result.meta.GRPDLY);
+    maybeAdd(result.meta, 'DECIM', result.meta.DECIM);
   }
@@ -69,1 +73,20 @@
 }
+
+function maybeAdd(obj, name, value) {
+  if (value === undefined) return;
+  if (Array.isArray(value)) {
+    obj[name] = value.map(cleanValue);
+  } else {
+    obj[name] = [cleanValue(value)];
+  }
+}
+
+function cleanValue(value) {
+  if (typeof value === 'string') {
+    if (value.startsWith('<') && value.endsWith('>')) {
+      value = value.substring(1, value.length - 1);
+    }
+    value = value.trim();
+  }
+  return value;
+}

New alerts

License Policy Violation

License

This package is not allowed per your license policy. Review the package's license to ensure compliance.

Found 1 instance in 1 package

No v1

Quality

Package is not semver >=1. This means it is not stable and does not support ^ ranges.

Found 1 instance in 1 package

Fixed alerts

License Policy Violation

License

This package is not allowed per your license policy. Review the package's license to ensure compliance.

Found 1 instance in 1 package

Improved metrics

Total package byte prevSize

54193

increased by2.65%

Lines of code

1547

increased by2.93%

Worsened metrics

Number of low quality alerts

2

increased by100%

Published versions last two months

0

decreased by-100%

No dependency changes