emdb - npm Package Compare versions

Comparing version 1.6.0 to 1.6.1

package.json

 {
   "name": "emdb",
-  "version": "1.6.0",
+  "version": "1.6.1",
   "description": "Database manager for exact mass query",
@@ -23,20 +23,20 @@ "main": "src/index.js",
     "chemical-groups": "^1.2.1",
-    "cross-fetch": "^3.1.4",
-    "isotopic-distribution": "^1.4.2",
+    "cross-fetch": "^3.1.5",
+    "isotopic-distribution": "^1.4.3",
     "jszip": "^3.7.1",
-    "mf-finder": "^1.2.1",
-    "mf-from-google-sheet": "^1.1.25",
-    "mf-generator": "^1.3.13",
-    "mf-matcher": "^1.1.19",
-    "mf-parser": "^1.4.0",
-    "mf-utilities": "^1.2.13",
-    "ml-array-max": "^1.2.3",
-    "ml-array-min": "^1.2.2",
+    "mf-finder": "^1.2.2",
+    "mf-from-google-sheet": "^1.1.26",
+    "mf-generator": "^1.3.14",
+    "mf-matcher": "^1.1.20",
+    "mf-parser": "^1.4.1",
+    "mf-utilities": "^1.2.14",
+    "ml-array-max": "^1.2.4",
+    "ml-array-min": "^1.2.3",
     "ml-regression-theil-sen": "^2.0.0",
-    "ms-spectrum": "^1.4.7",
-    "nucleotide": "^1.2.14",
+    "ms-spectrum": "^1.5.0",
+    "nucleotide": "^1.2.15",
     "peaks-similarity": "^2.3.1",
     "peptide": "^1.11.3"
   },
-  "gitHead": "0b932f49c82fd9fb2ef0804c1430b1499426ef95"
+  "gitHead": "3b0b2e28aa8079acba9cbd23ffb2886767badca7"
 }

src/append/__tests__/appendFragmentsInfo.test.js

@@ -25,3 +25,3 @@ 'use strict';
       },
-      precision: 1000,
+      precision: 20,
       allowNeutral: false,
@@ -33,10 +33,9 @@ });
     const results = await dbManager.appendFragmentsInfo('monoisotopic', {
-      precision: 10,
-      ionizations: 'H+',
+      precision: 5,
+      ionizations: '+',
     });
-    expect(results).toHaveLength(42);
+    //    console.log(results);
+    expect(results).toHaveLength(2);
     expect(results[0].fragments.nbFound).toBe(5);
-    expect(results[0].fragments.intensityFound).toBeCloseTo(
-      0.14515571864420396,
-    );
+    expect(results[0].fragments.intensityFound).toBeCloseTo(0.9708522002544118);
     expect(results[0].fragments.assignments).toHaveLength(5);
@@ -43,0 +42,0 @@ });

src/append/appendFragmentsInfo.js

@@ -27,3 +27,3 @@ 'use strict';
 
-  const peaks = experimentalSpectrum.getPeaks();
+  const peaks = experimentalSpectrum.getPeaks({ sumValue: 1 });
   for (let entry of database) {
@@ -39,3 +39,2 @@ const ranges = Object.keys(entry.atoms)
     };
-
     for (let i = 0; i < peaks.length; i++) {
@@ -42,0 +41,0 @@ if (onStep) await onStep(i);

No alert changes

Improved metrics

Total package byte prevSize

1252098

Worsened metrics

Lines of code

2156

decreased by-0.05%

Dependency changes

• Updatedcross-fetch@^3.1.5

• Updatedisotopic-distribution@^1.4.3

• Updatedmf-finder@^1.2.2

• Updatedmf-from-google-sheet@^1.1.26

• Updatedmf-generator@^1.3.14

• Updatedmf-matcher@^1.1.20

• Updatedmf-parser@^1.4.1

• Updatedmf-utilities@^1.2.14

• Updatedml-array-max@^1.2.4

• Updatedml-array-min@^1.2.3

• Updatedms-spectrum@^1.5.0

• Updatednucleotide@^1.2.15