g2p_mapper - npm Package Compare versions

Comparing version 1.0.6 to 1.0.7

dist/mapper.d.ts

@@ -12,6 +12,6 @@ export interface Feat {
 export declare function genomeToTranscriptSeqMapping(feature: Feat): {
-    g2p: Record<number, number | undefined>;
-    p2g: Record<number, number | undefined>;
+    g2p: Record<number, number>;
+    p2g: Record<number, number>;
     refName: string;
     strand: number;
 };

dist/mapper.test.js

 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
+const vitest_1 = require("vitest");
 const mapper_1 = require("./mapper");
-test('basic', () => {
+(0, vitest_1.test)('basic', () => {
     const ret = (0, mapper_1.genomeToTranscriptSeqMapping)({
@@ -25,4 +26,4 @@ type: 'mRNA',
     });
-    expect(ret).toMatchSnapshot();
+    (0, vitest_1.expect)(ret).toMatchSnapshot();
 });
 //# sourceMappingURL=mapper.test.js.map

package.json

 {
   "name": "g2p_mapper",
   "description": "Map genome to protein coordinates and back",
-  "version": "1.0.6",
+  "version": "1.0.7",
   "license": "MIT",
@@ -12,4 +12,6 @@ "main": "dist/mapper.js",
   "scripts": {
+    "test": "vitest",
+    "lint": "eslint --report-unused-disable-directives --max-warnings 0",
     "clean": "rimraf dist",
-    "test": "jest",
+    "format": "prettier --write .",
     "prebuild": "npm run clean",
@@ -22,3 +24,14 @@ "build": "tsc",
     "access": "public"
+  },
+  "devDependencies": {
+    "@types/node": "^20.11.28",
+    "@typescript-eslint/eslint-plugin": "^8.2.0",
+    "@typescript-eslint/parser": "^8.2.0",
+    "eslint": "^9.9.0",
+    "prettier": "^3.3.3",
+    "rimraf": "^6.0.1",
+    "typescript": "^5.5.4",
+    "typescript-eslint": "^8.2.0",
+    "vitest": "^2.1.5"
   }
 }

README.md

@@ -27,1 +27,6 @@ # g2p_mapper
 ```
+
+## Notes
+
+See also https://github.com/cmdcolin/interproscan2genome and
+https://github.com/cmdcolin/g2p_mapper_cli for usages of this tool

src/mapper.test.ts

@@ -0,1 +1,2 @@
+import { test, expect } from 'vitest'
 import { genomeToTranscriptSeqMapping } from './mapper'
@@ -2,0 +3,0 @@

src/mapper.ts

@@ -19,4 +19,4 @@ export interface Feat {
       .sort((a, b) => strand * (a.start - b.start)) ?? []
-  const g2p = {} as Record<number, number | undefined>
-  const p2g = {} as Record<number, number | undefined>
+  const g2p = {} as Record<number, number>
+  const p2g = {} as Record<number, number>
 
@@ -23,0 +23,0 @@ let proteinCounter = 0

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Improved metrics

Total package byte prevSize

9976

increased by7.08%

Lines of code

147

increased by1.38%

Number of lines in readme file

32

increased by18.52%

Worsened metrics

Dev dependency count

9

increased byInfinity%

No dependency changes