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gff-nostream

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gff-nostream - npm Package Compare versions

Comparing version 1.3.1 to 1.3.3

12

dist/api.d.ts

@@ -1,2 +0,2 @@

import { GFF3Item } from './util';
import { GFF3Feature } from './util';
/** Parser options */

@@ -22,3 +22,11 @@ export interface ParseOptions {

}
export declare function parseStringSync(str: string, inputOptions?: ParseOptions): GFF3Item[];
/**
* Synchronously parse a string containing GFF3 and return an array of the
* parsed items.
*
* @param str - GFF3 string
* @param inputOptions - Parsing options
* @returns array of parsed features, directives, comments and/or sequences
*/
export declare function parseStringSync(str: string): GFF3Feature[];
export { type GFF3FeatureLine, type GFF3Comment, type GFF3FeatureLineWithRefs, type GFF3Directive, type GFF3Sequence, type GFF3Feature, type GFF3Item, } from './util';

37

dist/api.js

@@ -8,26 +8,15 @@ "use strict";

const parse_1 = __importDefault(require("./parse"));
// shared arg processing for the parse routines
function _processParseOptions(options) {
const out = Object.assign({ encoding: 'utf8', parseFeatures: true, parseDirectives: false, parseSequences: true, parseComments: false, disableDerivesFromReferences: false }, options);
if (options.parseAll) {
out.parseFeatures = true;
out.parseDirectives = true;
out.parseComments = true;
out.parseSequences = true;
}
return out;
}
function parseStringSync(str, inputOptions = {}) {
if (!str) {
return [];
}
const options = _processParseOptions(inputOptions);
/**
* Synchronously parse a string containing GFF3 and return an array of the
* parsed items.
*
* @param str - GFF3 string
* @param inputOptions - Parsing options
* @returns array of parsed features, directives, comments and/or sequences
*/
function parseStringSync(str) {
const items = [];
const push = items.push.bind(items);
const parser = new parse_1.default({
featureCallback: options.parseFeatures ? push : undefined,
directiveCallback: options.parseDirectives ? push : undefined,
commentCallback: options.parseComments ? push : undefined,
sequenceCallback: options.parseSequences ? push : undefined,
disableDerivesFromReferences: options.disableDerivesFromReferences || false,
featureCallback: arg => items.push(arg),
disableDerivesFromReferences: true,
errorCallback: err => {

@@ -37,3 +26,5 @@ throw err;

});
str.split(/\r?\n/).forEach(parser.addLine.bind(parser));
for (const line of str.split(/\r?\n/)) {
parser.addLine(line);
}
parser.finish();

@@ -40,0 +31,0 @@ return items;

@@ -1,2 +0,2 @@

import { GFF3Item } from './util';
import { GFF3Feature } from './util';
/** Parser options */

@@ -22,3 +22,11 @@ export interface ParseOptions {

}
export declare function parseStringSync(str: string, inputOptions?: ParseOptions): GFF3Item[];
/**
* Synchronously parse a string containing GFF3 and return an array of the
* parsed items.
*
* @param str - GFF3 string
* @param inputOptions - Parsing options
* @returns array of parsed features, directives, comments and/or sequences
*/
export declare function parseStringSync(str: string): GFF3Feature[];
export { type GFF3FeatureLine, type GFF3Comment, type GFF3FeatureLineWithRefs, type GFF3Directive, type GFF3Sequence, type GFF3Feature, type GFF3Item, } from './util';
import Parser from './parse';
// shared arg processing for the parse routines
function _processParseOptions(options) {
const out = {
encoding: 'utf8',
parseFeatures: true,
parseDirectives: false,
parseSequences: true,
parseComments: false,
disableDerivesFromReferences: false,
...options,
};
if (options.parseAll) {
out.parseFeatures = true;
out.parseDirectives = true;
out.parseComments = true;
out.parseSequences = true;
}
return out;
}
export function parseStringSync(str, inputOptions = {}) {
if (!str) {
return [];
}
const options = _processParseOptions(inputOptions);
/**
* Synchronously parse a string containing GFF3 and return an array of the
* parsed items.
*
* @param str - GFF3 string
* @param inputOptions - Parsing options
* @returns array of parsed features, directives, comments and/or sequences
*/
export function parseStringSync(str) {
const items = [];
const push = items.push.bind(items);
const parser = new Parser({
featureCallback: options.parseFeatures ? push : undefined,
directiveCallback: options.parseDirectives ? push : undefined,
commentCallback: options.parseComments ? push : undefined,
sequenceCallback: options.parseSequences ? push : undefined,
disableDerivesFromReferences: options.disableDerivesFromReferences || false,
featureCallback: arg => items.push(arg),
disableDerivesFromReferences: true,
errorCallback: err => {

@@ -38,3 +19,5 @@ throw err;

});
str.split(/\r?\n/).forEach(parser.addLine.bind(parser));
for (const line of str.split(/\r?\n/)) {
parser.addLine(line);
}
parser.finish();

@@ -41,0 +24,0 @@ return items;

{
"name": "gff-nostream",
"version": "1.3.1",
"version": "1.3.3",
"description": "utilities to read GFF3 data",

@@ -5,0 +5,0 @@ "license": "MIT",

import Parser from './parse'
import { GFF3Item } from './util'
import {
GFF3Comment,
GFF3Directive,
GFF3Feature,
GFF3Item,
GFF3Sequence,
parseFeature,
} from './util'

@@ -27,42 +34,15 @@ /** Parser options */

// shared arg processing for the parse routines
function _processParseOptions(options: ParseOptions): ParseOptionsProcessed {
const out = {
encoding: 'utf8' as const,
parseFeatures: true,
parseDirectives: false,
parseSequences: true,
parseComments: false,
disableDerivesFromReferences: false,
...options,
}
if (options.parseAll) {
out.parseFeatures = true
out.parseDirectives = true
out.parseComments = true
out.parseSequences = true
}
return out
}
export function parseStringSync(
str: string,
inputOptions: ParseOptions = {},
): GFF3Item[] {
if (!str) {
return []
}
const options = _processParseOptions(inputOptions)
const items: GFF3Item[] = []
const push = items.push.bind(items)
/**
* Synchronously parse a string containing GFF3 and return an array of the
* parsed items.
*
* @param str - GFF3 string
* @param inputOptions - Parsing options
* @returns array of parsed features, directives, comments and/or sequences
*/
export function parseStringSync(str: string): GFF3Feature[] {
const items: GFF3Feature[] = []
const parser = new Parser({
featureCallback: options.parseFeatures ? push : undefined,
directiveCallback: options.parseDirectives ? push : undefined,
commentCallback: options.parseComments ? push : undefined,
sequenceCallback: options.parseSequences ? push : undefined,
disableDerivesFromReferences: options.disableDerivesFromReferences || false,
featureCallback: arg => items.push(arg),
disableDerivesFromReferences: true,
errorCallback: err => {

@@ -73,3 +53,5 @@ throw err

str.split(/\r?\n/).forEach(parser.addLine.bind(parser))
for (const line of str.split(/\r?\n/)) {
parser.addLine(line)
}
parser.finish()

@@ -76,0 +58,0 @@

Sorry, the diff of this file is not supported yet

Sorry, the diff of this file is not supported yet

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