ms-spectrum - npm Package Compare versions

Comparing version 3.6.10 to 3.7.0

lib/src/getBestPeaks.d.ts

@@ -10,2 +10,4 @@ /**
  * @param {number} [options.to] - max X value of the window to consider
+ * @param {number} [options.minValue=Number.NEGATIVE_INFINITY] - min Y value of the window to consider
+ * @param {number} [options.maxValue=Number.POSITIVE_INFINITY] - max Y value of the window to consider
  * @param {number} [options.searchMonoisotopicRatio=0] - search previous peaks with at least ratio height
@@ -21,2 +23,4 @@ * @param {number} [options.limit=20] - max number of peaks
     to?: number;
+    minValue?: number;
+    maxValue?: number;
     searchMonoisotopicRatio?: number;
@@ -23,0 +27,0 @@ limit?: number;

lib/src/getBestPeaks.js

@@ -14,2 +14,4 @@ "use strict";
  * @param {number} [options.to] - max X value of the window to consider
+ * @param {number} [options.minValue=Number.NEGATIVE_INFINITY] - min Y value of the window to consider
+ * @param {number} [options.maxValue=Number.POSITIVE_INFINITY] - max Y value of the window to consider
  * @param {number} [options.searchMonoisotopicRatio=0] - search previous peaks with at least ratio height
@@ -23,3 +25,3 @@ * @param {number} [options.limit=20] - max number of peaks
 function getBestPeaks(peaks, options = {}) {
-    const { searchMonoisotopicRatio = 0, from = (0, ml_spectra_processing_1.xyObjectMinXPoint)(peaks).x, to = (0, ml_spectra_processing_1.xyObjectMaxXPoint)(peaks).x, limit = 20, threshold = 0.01, numberCloseSlots = 50, numberSlots = 10, } = options;
+    const { searchMonoisotopicRatio = 0, from = (0, ml_spectra_processing_1.xyObjectMinXPoint)(peaks).x, to = (0, ml_spectra_processing_1.xyObjectMaxXPoint)(peaks).x, limit = 20, threshold = 0.01, numberCloseSlots = 50, numberSlots = 10, minValue = Number.NEGATIVE_INFINITY, maxValue = Number.POSITIVE_INFINITY, } = options;
     let slot = (to - from) / numberSlots;
@@ -29,2 +31,3 @@ let closeSlot = (to - from) / numberCloseSlots;
         .filter((peak) => peak.x >= from && peak.x <= to)
+        .filter((peak) => peak.y >= minValue && peak.y <= maxValue)
         .map((peak) => {
@@ -31,0 +34,0 @@ return {

package.json

 {
   "name": "ms-spectrum",
-  "version": "3.6.10",
+  "version": "3.7.0",
   "description": "A mass spectrum",
@@ -24,6 +24,6 @@ "main": "lib/src/index.js",
     "cheminfo-types": "^1.8.0",
-    "emdb": "^3.3.10",
+    "emdb": "^3.3.11",
     "is-any-array": "^2.0.1",
     "mf-parser": "^3.2.5",
-    "mf-utilities": "^3.2.6",
+    "mf-utilities": "^3.3.0",
     "ml-gsd": "^12.1.8",
@@ -39,3 +39,3 @@ "ml-regression-power": "^3.0.0",
   },
-  "gitHead": "ead08ac8b436c6d4eb0016e938cb17a0dc5e2b06"
+  "gitHead": "78eda3ed5d6830f7570d3867af21af2d5345a39e"
 }

src/getBestPeaks.js

@@ -12,2 +12,4 @@ import { xyObjectMaxXPoint, xyObjectMinXPoint } from 'ml-spectra-processing';
  * @param {number} [options.to] - max X value of the window to consider
+ * @param {number} [options.minValue=Number.NEGATIVE_INFINITY] - min Y value of the window to consider
+ * @param {number} [options.maxValue=Number.POSITIVE_INFINITY] - max Y value of the window to consider
  * @param {number} [options.searchMonoisotopicRatio=0] - search previous peaks with at least ratio height
@@ -30,2 +32,4 @@ * @param {number} [options.limit=20] - max number of peaks
     numberSlots = 10,
+    minValue = Number.NEGATIVE_INFINITY,
+    maxValue = Number.POSITIVE_INFINITY,
   } = options;
@@ -36,2 +40,3 @@ let slot = (to - from) / numberSlots;
     .filter((peak) => peak.x >= from && peak.x <= to)
+    .filter((peak) => peak.y >= minValue && peak.y <= maxValue)
     .map((peak) => {
@@ -38,0 +43,0 @@ return {

New alerts

License Policy Violation

License

This package is not allowed per your license policy. Review the package's license to ensure compliance.

Found 1 instance in 1 package

Fixed alerts

License Policy Violation

License

This package is not allowed per your license policy. Review the package's license to ensure compliance.

Found 1 instance in 1 package

Improved metrics

Total package byte prevSize

172943

increased by0.65%

Lines of code

2539

increased by0.51%

Dependency changes

• Updatedemdb@^3.3.11

• Updatedmf-utilities@^3.3.0