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ove-auto-annotate
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ove-auto-annotate - npm Package Compare versions
Comparing version 0.0.3 to 0.0.4
@@ -7,2 +7,4 @@ import _regeneratorRuntime from "@babel/runtime/regenerator"; | ||
| function _extends() { _extends = Object.assign || function (target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i]; for (var key in source) { if (Object.prototype.hasOwnProperty.call(source, key)) { target[key] = source[key]; } } } return target; }; return _extends.apply(this, arguments); } | ||
| import { formName } from "./constants"; | ||
@@ -41,3 +43,8 @@ var _window$addOnGlobals = window.addOnGlobals, | ||
| formName: formName, | ||
| entities: newAnnotations, | ||
| entities: newAnnotations.map(function (e) { | ||
| return _extends({}, e, { | ||
| start: e.start + 1, | ||
| end: e.end + 1 | ||
| }); | ||
| }), | ||
| withCheckboxes: true, | ||
@@ -44,0 +51,0 @@ schema: annotationType === "feature" ? schemaFeatures : schemaOther |
277
es/index.js
@@ -9,2 +9,4 @@ import _regeneratorRuntime from "@babel/runtime/regenerator"; | ||
| function _extends() { _extends = Object.assign || function (target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i]; for (var key in source) { if (Object.prototype.hasOwnProperty.call(source, key)) { target[key] = source[key]; } } } return target; }; return _extends.apply(this, arguments); } | ||
| function asyncGeneratorStep(gen, resolve, reject, _next, _throw, key, arg) { try { var info = gen[key](arg); var value = info.value; } catch (error) { reject(error); return; } if (info.done) { resolve(value); } else { Promise.resolve(value).then(_next, _throw); } } | ||
@@ -14,4 +16,2 @@ | ||
| function _extends() { _extends = Object.assign || function (target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i]; for (var key in source) { if (Object.prototype.hasOwnProperty.call(source, key)) { target[key] = source[key]; } } } return target; }; return _extends.apply(this, arguments); } | ||
| /* eslint-disable jsx-a11y/anchor-is-valid */ | ||
@@ -51,3 +51,6 @@ | ||
| convertApELikeRegexToRegex = _window$addOnGlobals.convertApELikeRegexToRegex, | ||
| autoAnnotate = _window$addOnGlobals.autoAnnotate; | ||
| autoAnnotate = _window$addOnGlobals.autoAnnotate, | ||
| useEffect = _window$addOnGlobals.useEffect, | ||
| DataTable = _window$addOnGlobals.DataTable, | ||
| typeField = _window$addOnGlobals.typeField; | ||
| export function autoAnnotateFeatures() { | ||
@@ -91,3 +94,4 @@ showDialog({ | ||
| annotationType = _props$annotationType === void 0 ? "feature" : _props$annotationType, | ||
| error = props.error; | ||
| error = props.error, | ||
| getCustomAutoAnnotateList = props.getCustomAutoAnnotateList; | ||
@@ -102,2 +106,53 @@ var _useState = useState("csvFile"), | ||
| var _useState3 = useState(), | ||
| customAnnResponse = _useState3[0], | ||
| setCustomAnnResponse = _useState3[1]; | ||
| var _useState4 = useState(), | ||
| loadingCustomAnnList = _useState4[0], | ||
| setLoadingCustomAnnList = _useState4[1]; | ||
| useEffect(function () { | ||
| _asyncToGenerator( /*#__PURE__*/_regeneratorRuntime.mark(function _callee() { | ||
| var anns; | ||
| return _regeneratorRuntime.wrap(function _callee$(_context) { | ||
| while (1) { | ||
| switch (_context.prev = _context.next) { | ||
| case 0: | ||
| if (!getCustomAutoAnnotateList) { | ||
| _context.next = 16; | ||
| break; | ||
| } | ||
| setLoadingCustomAnnList(true); | ||
| _context.prev = 2; | ||
| _context.next = 5; | ||
| return getCustomAutoAnnotateList(props); | ||
| case 5: | ||
| anns = _context.sent; | ||
| setCustomAnnResponse(anns); | ||
| _context.next = 13; | ||
| break; | ||
| case 9: | ||
| _context.prev = 9; | ||
| _context.t0 = _context["catch"](2); | ||
| window.toastr.warning("Error loading custom annotation list"); | ||
| console.error("e:", _context.t0); | ||
| case 13: | ||
| _context.prev = 13; | ||
| setLoadingCustomAnnList(false); | ||
| return _context.finish(13); | ||
| case 16: | ||
| case "end": | ||
| return _context.stop(); | ||
| } | ||
| } | ||
| }, _callee, null, [[2, 9, 13, 16]]); | ||
| }))(); | ||
| }, [getCustomAutoAnnotateList, props]); | ||
| if (newAnnotations) { | ||
@@ -184,24 +239,36 @@ return /*#__PURE__*/React.createElement(CreateAnnotationsPage, _extends({}, props, { | ||
| title: "ApE File" | ||
| })), /*#__PURE__*/React.createElement(DialogFooter, { | ||
| }), getCustomAutoAnnotateList && (loadingCustomAnnList ? /*#__PURE__*/React.createElement(Tab, { | ||
| disabled: true, | ||
| title: "Loading..." | ||
| }) : customAnnResponse && /*#__PURE__*/React.createElement(Tab, { | ||
| id: "implementerDefined", | ||
| title: customAnnResponse && customAnnResponse.title || "Custom List", | ||
| panel: customAnnResponse && customAnnResponse.list && customAnnResponse.list.length ? /*#__PURE__*/React.createElement("div", null, /*#__PURE__*/React.createElement(DataTable, { | ||
| isInfinite: true, | ||
| schema: annotationType === "feature" ? customAnnsSchema : customAnnsSchemaNoType, | ||
| entities: customAnnResponse.list | ||
| })) : /*#__PURE__*/React.createElement("div", null, "No Annotations Found") | ||
| }))), /*#__PURE__*/React.createElement(DialogFooter, { | ||
| hideModal: hideDialog, | ||
| disabled: fileType === "implementerDefined" && !(customAnnResponse && customAnnResponse.list && customAnnResponse.list.length), | ||
| onClick: handleSubmit( /*#__PURE__*/function () { | ||
| var _ref2 = _asyncToGenerator( /*#__PURE__*/_regeneratorRuntime.mark(function _callee2(_ref) { | ||
| var apeFile, csvFile, convertNonStandardTypes, annsToCheck, _seqsToAnnotateById, validateRow, csvHeaders, _yield$parseCsvFile, data, fields, _error, _iterator, _step, _step$value, index, row, _error2, _yield$parseCsvFile2, _data, _iterator2, _step2, _step2$value, i, _step2$value$, name, sequence, type, annotationsToCheckById, seqId, _autoAnnotate, newAnns, _SubmissionError; | ||
| var _ref3 = _asyncToGenerator( /*#__PURE__*/_regeneratorRuntime.mark(function _callee3(_ref2) { | ||
| var apeFile, csvFile, convertNonStandardTypes, annsToCheck, _seqsToAnnotateById, validateRow, _iterator, _step, _step$value, i, _step$value$, name, sequence, type, isRegex, csvHeaders, _yield$parseCsvFile, data, fields, _error, _iterator2, _step2, _step2$value, index, row, _error2, _yield$parseCsvFile2, _data, _iterator3, _step3, _step3$value, _i, _step3$value$, _name, _sequence, _type, annotationsToCheckById, seqId, _autoAnnotate, newAnns, _SubmissionError; | ||
| return _regeneratorRuntime.wrap(function _callee2$(_context2) { | ||
| return _regeneratorRuntime.wrap(function _callee3$(_context3) { | ||
| while (1) { | ||
| switch (_context2.prev = _context2.next) { | ||
| switch (_context3.prev = _context3.next) { | ||
| case 0: | ||
| apeFile = _ref.apeFile, csvFile = _ref.csvFile; | ||
| apeFile = _ref2.apeFile, csvFile = _ref2.csvFile; | ||
| convertNonStandardTypes = false; | ||
| annsToCheck = []; | ||
| _context2.prev = 3; | ||
| _context3.prev = 3; | ||
| validateRow = /*#__PURE__*/function () { | ||
| var _ref3 = _asyncToGenerator( /*#__PURE__*/_regeneratorRuntime.mark(function _callee(row, rowName) { | ||
| var _ref4 = _asyncToGenerator( /*#__PURE__*/_regeneratorRuntime.mark(function _callee2(row, rowName) { | ||
| var _row$type, type, sequence, regexConvertedSeq, cleanedType; | ||
| return _regeneratorRuntime.wrap(function _callee$(_context) { | ||
| return _regeneratorRuntime.wrap(function _callee2$(_context2) { | ||
| while (1) { | ||
| switch (_context.prev = _context.next) { | ||
| switch (_context2.prev = _context2.next) { | ||
| case 0: | ||
@@ -211,3 +278,3 @@ _row$type = row.type, type = _row$type === void 0 ? "" : _row$type, sequence = row.sequence; | ||
| if (!(annotationType === "feature")) { | ||
| _context.next = 14; | ||
| _context2.next = 14; | ||
| break; | ||
@@ -221,3 +288,3 @@ } | ||
| if (cleanedType) { | ||
| _context.next = 13; | ||
| _context2.next = 13; | ||
| break; | ||
@@ -227,7 +294,7 @@ } | ||
| if (convertNonStandardTypes) { | ||
| _context.next = 10; | ||
| _context2.next = 10; | ||
| break; | ||
| } | ||
| _context.next = 7; | ||
| _context2.next = 7; | ||
| return showConfirmationDialog({ | ||
@@ -239,6 +306,6 @@ cancelButtonText: "Stop Auto-Annotate", | ||
| case 7: | ||
| convertNonStandardTypes = _context.sent; | ||
| convertNonStandardTypes = _context2.sent; | ||
| if (convertNonStandardTypes) { | ||
| _context.next = 10; | ||
| _context2.next = 10; | ||
| break; | ||
@@ -253,3 +320,3 @@ } | ||
| row.type = "misc_feature"; | ||
| _context.next = 14; | ||
| _context2.next = 14; | ||
| break; | ||
@@ -262,3 +329,3 @@ | ||
| if (sequence) { | ||
| _context.next = 16; | ||
| _context2.next = 16; | ||
| break; | ||
@@ -273,15 +340,15 @@ } | ||
| if (!(row.isRegex && row.isRegex.toUpperCase() === "TRUE")) { | ||
| _context.next = 27; | ||
| _context2.next = 27; | ||
| break; | ||
| } | ||
| _context.prev = 17; | ||
| _context2.prev = 17; | ||
| new RegExp(regexConvertedSeq); //just trying out whether the regexConvertedSeq will work as a valid regex | ||
| _context.next = 24; | ||
| _context2.next = 24; | ||
| break; | ||
| case 21: | ||
| _context.prev = 21; | ||
| _context.t0 = _context["catch"](17); | ||
| _context2.prev = 21; | ||
| _context2.t0 = _context2["catch"](17); | ||
| throw { | ||
@@ -293,3 +360,3 @@ validationError: rowName + " has an invalid sequence/regex. Please fix it manually." | ||
| row.isRegex = true; | ||
| _context.next = 28; | ||
| _context2.next = 28; | ||
| break; | ||
@@ -305,15 +372,47 @@ | ||
| case "end": | ||
| return _context.stop(); | ||
| return _context2.stop(); | ||
| } | ||
| } | ||
| }, _callee, null, [[17, 21]]); | ||
| }, _callee2, null, [[17, 21]]); | ||
| })); | ||
| return function validateRow(_x2, _x3) { | ||
| return _ref3.apply(this, arguments); | ||
| return _ref4.apply(this, arguments); | ||
| }; | ||
| }(); | ||
| if (!(fileType === "implementerDefined")) { | ||
| _context3.next = 15; | ||
| break; | ||
| } | ||
| _iterator = _createForOfIteratorHelperLoose(customAnnResponse.list.entries()); | ||
| case 7: | ||
| if ((_step = _iterator()).done) { | ||
| _context3.next = 13; | ||
| break; | ||
| } | ||
| _step$value = _step.value, // eslint-disable-next-line no-unused-vars | ||
| i = _step$value[0], _step$value$ = _step$value[1], name = _step$value$.name, sequence = _step$value$.sequence, type = _step$value$.type, isRegex = _step$value$.isRegex; | ||
| _context3.next = 11; | ||
| return validateRow({ | ||
| name: name, | ||
| sequence: sequence, | ||
| type: type, | ||
| isRegex: isRegex ? "TRUE" : "FALSE" | ||
| }, "Row " + (i + 1) + " (" + name + ")"); | ||
| case 11: | ||
| _context3.next = 7; | ||
| break; | ||
| case 13: | ||
| _context3.next = 55; | ||
| break; | ||
| case 15: | ||
| if (!(fileType === "csvFile")) { | ||
| _context2.next = 29; | ||
| _context3.next = 39; | ||
| break; | ||
@@ -329,7 +428,7 @@ } | ||
| csvHeaders.push("isRegex"); | ||
| _context2.next = 11; | ||
| _context3.next = 21; | ||
| return parseCsvFile(csvFile[0]); | ||
| case 11: | ||
| _yield$parseCsvFile = _context2.sent; | ||
| case 21: | ||
| _yield$parseCsvFile = _context3.sent; | ||
| data = _yield$parseCsvFile.data; | ||
@@ -340,3 +439,3 @@ fields = _yield$parseCsvFile.meta.fields; | ||
| if (!_error) { | ||
| _context2.next = 17; | ||
| _context3.next = 27; | ||
| break; | ||
@@ -349,16 +448,16 @@ } | ||
| case 17: | ||
| _iterator = _createForOfIteratorHelperLoose(data.entries()); | ||
| case 27: | ||
| _iterator2 = _createForOfIteratorHelperLoose(data.entries()); | ||
| case 18: | ||
| if ((_step = _iterator()).done) { | ||
| _context2.next = 27; | ||
| case 28: | ||
| if ((_step2 = _iterator2()).done) { | ||
| _context3.next = 37; | ||
| break; | ||
| } | ||
| _step$value = _step.value, index = _step$value[0], row = _step$value[1]; | ||
| _step2$value = _step2.value, index = _step2$value[0], row = _step2$value[1]; | ||
| _error2 = validateCSVRow(row, csvHeaders, index); | ||
| if (!_error2) { | ||
| _context2.next = 23; | ||
| _context3.next = 33; | ||
| break; | ||
@@ -371,21 +470,21 @@ } | ||
| case 23: | ||
| _context2.next = 25; | ||
| return validateRow(row, "Row " + (index + 1)); | ||
| case 33: | ||
| _context3.next = 35; | ||
| return validateRow(row, "Row " + (index + 1) + " (" + row.name + ")"); | ||
| case 25: | ||
| _context2.next = 18; | ||
| case 35: | ||
| _context3.next = 28; | ||
| break; | ||
| case 27: | ||
| _context2.next = 45; | ||
| case 37: | ||
| _context3.next = 55; | ||
| break; | ||
| case 29: | ||
| case 39: | ||
| if (!(fileType === "apeFile")) { | ||
| _context2.next = 43; | ||
| _context3.next = 53; | ||
| break; | ||
| } | ||
| _context2.next = 32; | ||
| _context3.next = 42; | ||
| return parseCsvFile(apeFile[0], { | ||
@@ -395,42 +494,42 @@ header: false | ||
| case 32: | ||
| _yield$parseCsvFile2 = _context2.sent; | ||
| case 42: | ||
| _yield$parseCsvFile2 = _context3.sent; | ||
| _data = _yield$parseCsvFile2.data; | ||
| _iterator2 = _createForOfIteratorHelperLoose(_data.entries()); | ||
| _iterator3 = _createForOfIteratorHelperLoose(_data.entries()); | ||
| case 35: | ||
| if ((_step2 = _iterator2()).done) { | ||
| _context2.next = 41; | ||
| case 45: | ||
| if ((_step3 = _iterator3()).done) { | ||
| _context3.next = 51; | ||
| break; | ||
| } | ||
| _step2$value = _step2.value, i = _step2$value[0], _step2$value$ = _step2$value[1], name = _step2$value$[0], sequence = _step2$value$[1], type = _step2$value$[2]; | ||
| _context2.next = 39; | ||
| _step3$value = _step3.value, _i = _step3$value[0], _step3$value$ = _step3$value[1], _name = _step3$value$[0], _sequence = _step3$value$[1], _type = _step3$value$[2]; | ||
| _context3.next = 49; | ||
| return validateRow({ | ||
| name: name, | ||
| sequence: sequence, | ||
| type: type | ||
| }, "Row " + (i + 1)); | ||
| name: _name, | ||
| sequence: _sequence, | ||
| type: _type | ||
| }, "Row " + (_i + 1) + " (" + _name + ")"); | ||
| case 39: | ||
| _context2.next = 35; | ||
| case 49: | ||
| _context3.next = 45; | ||
| break; | ||
| case 41: | ||
| _context2.next = 45; | ||
| case 51: | ||
| _context3.next = 55; | ||
| break; | ||
| case 43: | ||
| case 53: | ||
| console.info("we shouldn't be here!"); | ||
| console.info("fileType:", fileType); | ||
| case 45: | ||
| case 55: | ||
| if (annsToCheck.length) { | ||
| _context2.next = 47; | ||
| _context3.next = 57; | ||
| break; | ||
| } | ||
| return _context2.abrupt("return", window.toastr.warning("No Annotations Detected on File. Please check that your file is in the correct format.")); | ||
| return _context3.abrupt("return", window.toastr.warning("No Annotations Detected on File. Please check that your file is in the correct format.")); | ||
| case 47: | ||
| case 57: | ||
| annotationsToCheckById = {}; | ||
@@ -466,30 +565,30 @@ annsToCheck.forEach(function (ann) { | ||
| _context2.next = 62; | ||
| _context3.next = 72; | ||
| break; | ||
| case 54: | ||
| _context2.prev = 54; | ||
| _context2.t0 = _context2["catch"](3); | ||
| console.error("error:", _context2.t0); | ||
| case 64: | ||
| _context3.prev = 64; | ||
| _context3.t0 = _context3["catch"](3); | ||
| console.error("error:", _context3.t0); | ||
| if (!_context2.t0.validationError) { | ||
| _context2.next = 61; | ||
| if (!_context3.t0.validationError) { | ||
| _context3.next = 71; | ||
| break; | ||
| } | ||
| throw new SubmissionError((_SubmissionError = {}, _SubmissionError[fileType] = _context2.t0.validationError, _SubmissionError)); | ||
| throw new SubmissionError((_SubmissionError = {}, _SubmissionError[fileType] = _context3.t0.validationError, _SubmissionError)); | ||
| case 61: | ||
| case 71: | ||
| window.toastr.error("Error annotating " + annotationType + "(s). Double check your file to make sure it is valid!"); | ||
| case 62: | ||
| case 72: | ||
| case "end": | ||
| return _context2.stop(); | ||
| return _context3.stop(); | ||
| } | ||
| } | ||
| }, _callee2, null, [[3, 54]]); | ||
| }, _callee3, null, [[3, 64]]); | ||
| })); | ||
| return function (_x) { | ||
| return _ref2.apply(this, arguments); | ||
| return _ref3.apply(this, arguments); | ||
| }; | ||
@@ -503,2 +602,4 @@ }()), | ||
| window._ove_addons.autoAnnotateParts = autoAnnotateParts; | ||
| window._ove_addons.autoAnnotatePrimers = autoAnnotatePrimers; | ||
| window._ove_addons.autoAnnotatePrimers = autoAnnotatePrimers; | ||
| var customAnnsSchema = ["name", "sequence", typeField, "isRegex"]; | ||
| var customAnnsSchemaNoType = ["name", "sequence", typeField, "isRegex"]; |
@@ -16,2 +16,4 @@ "use strict"; | ||
| function _extends() { _extends = Object.assign || function (target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i]; for (var key in source) { if (Object.prototype.hasOwnProperty.call(source, key)) { target[key] = source[key]; } } } return target; }; return _extends.apply(this, arguments); } | ||
| var _window$addOnGlobals = window.addOnGlobals, | ||
@@ -50,3 +52,8 @@ startCase = _window$addOnGlobals.startCase, | ||
| formName: _constants.formName, | ||
| entities: newAnnotations, | ||
| entities: newAnnotations.map(function (e) { | ||
| return _extends({}, e, { | ||
| start: e.start + 1, | ||
| end: e.end + 1 | ||
| }); | ||
| }), | ||
| withCheckboxes: true, | ||
@@ -53,0 +60,0 @@ schema: annotationType === "feature" ? schemaFeatures : schemaOther |
277
lib/index.js
@@ -31,2 +31,4 @@ "use strict"; | ||
| function _extends() { _extends = Object.assign || function (target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i]; for (var key in source) { if (Object.prototype.hasOwnProperty.call(source, key)) { target[key] = source[key]; } } } return target; }; return _extends.apply(this, arguments); } | ||
| function asyncGeneratorStep(gen, resolve, reject, _next, _throw, key, arg) { try { var info = gen[key](arg); var value = info.value; } catch (error) { reject(error); return; } if (info.done) { resolve(value); } else { Promise.resolve(value).then(_next, _throw); } } | ||
@@ -36,4 +38,2 @@ | ||
| function _extends() { _extends = Object.assign || function (target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i]; for (var key in source) { if (Object.prototype.hasOwnProperty.call(source, key)) { target[key] = source[key]; } } } return target; }; return _extends.apply(this, arguments); } | ||
| var _window$addOnGlobals = window.addOnGlobals, | ||
@@ -62,3 +62,6 @@ shortid = _window$addOnGlobals.shortid, | ||
| convertApELikeRegexToRegex = _window$addOnGlobals.convertApELikeRegexToRegex, | ||
| autoAnnotate = _window$addOnGlobals.autoAnnotate; | ||
| autoAnnotate = _window$addOnGlobals.autoAnnotate, | ||
| useEffect = _window$addOnGlobals.useEffect, | ||
| DataTable = _window$addOnGlobals.DataTable, | ||
| typeField = _window$addOnGlobals.typeField; | ||
@@ -106,3 +109,4 @@ function autoAnnotateFeatures() { | ||
| annotationType = _props$annotationType === void 0 ? "feature" : _props$annotationType, | ||
| error = props.error; | ||
| error = props.error, | ||
| getCustomAutoAnnotateList = props.getCustomAutoAnnotateList; | ||
@@ -117,2 +121,53 @@ var _useState = useState("csvFile"), | ||
| var _useState3 = useState(), | ||
| customAnnResponse = _useState3[0], | ||
| setCustomAnnResponse = _useState3[1]; | ||
| var _useState4 = useState(), | ||
| loadingCustomAnnList = _useState4[0], | ||
| setLoadingCustomAnnList = _useState4[1]; | ||
| useEffect(function () { | ||
| _asyncToGenerator( /*#__PURE__*/_regenerator["default"].mark(function _callee() { | ||
| var anns; | ||
| return _regenerator["default"].wrap(function _callee$(_context) { | ||
| while (1) { | ||
| switch (_context.prev = _context.next) { | ||
| case 0: | ||
| if (!getCustomAutoAnnotateList) { | ||
| _context.next = 16; | ||
| break; | ||
| } | ||
| setLoadingCustomAnnList(true); | ||
| _context.prev = 2; | ||
| _context.next = 5; | ||
| return getCustomAutoAnnotateList(props); | ||
| case 5: | ||
| anns = _context.sent; | ||
| setCustomAnnResponse(anns); | ||
| _context.next = 13; | ||
| break; | ||
| case 9: | ||
| _context.prev = 9; | ||
| _context.t0 = _context["catch"](2); | ||
| window.toastr.warning("Error loading custom annotation list"); | ||
| console.error("e:", _context.t0); | ||
| case 13: | ||
| _context.prev = 13; | ||
| setLoadingCustomAnnList(false); | ||
| return _context.finish(13); | ||
| case 16: | ||
| case "end": | ||
| return _context.stop(); | ||
| } | ||
| } | ||
| }, _callee, null, [[2, 9, 13, 16]]); | ||
| }))(); | ||
| }, [getCustomAutoAnnotateList, props]); | ||
| if (newAnnotations) { | ||
@@ -199,24 +254,36 @@ return /*#__PURE__*/React.createElement(_CreateAnnotationsPage["default"], _extends({}, props, { | ||
| title: "ApE File" | ||
| })), /*#__PURE__*/React.createElement(DialogFooter, { | ||
| }), getCustomAutoAnnotateList && (loadingCustomAnnList ? /*#__PURE__*/React.createElement(Tab, { | ||
| disabled: true, | ||
| title: "Loading..." | ||
| }) : customAnnResponse && /*#__PURE__*/React.createElement(Tab, { | ||
| id: "implementerDefined", | ||
| title: customAnnResponse && customAnnResponse.title || "Custom List", | ||
| panel: customAnnResponse && customAnnResponse.list && customAnnResponse.list.length ? /*#__PURE__*/React.createElement("div", null, /*#__PURE__*/React.createElement(DataTable, { | ||
| isInfinite: true, | ||
| schema: annotationType === "feature" ? customAnnsSchema : customAnnsSchemaNoType, | ||
| entities: customAnnResponse.list | ||
| })) : /*#__PURE__*/React.createElement("div", null, "No Annotations Found") | ||
| }))), /*#__PURE__*/React.createElement(DialogFooter, { | ||
| hideModal: hideDialog, | ||
| disabled: fileType === "implementerDefined" && !(customAnnResponse && customAnnResponse.list && customAnnResponse.list.length), | ||
| onClick: handleSubmit( /*#__PURE__*/function () { | ||
| var _ref2 = _asyncToGenerator( /*#__PURE__*/_regenerator["default"].mark(function _callee2(_ref) { | ||
| var apeFile, csvFile, convertNonStandardTypes, annsToCheck, _seqsToAnnotateById, validateRow, csvHeaders, _yield$parseCsvFile, data, fields, _error, _iterator, _step, _step$value, index, row, _error2, _yield$parseCsvFile2, _data, _iterator2, _step2, _step2$value, i, _step2$value$, name, sequence, type, annotationsToCheckById, seqId, _autoAnnotate, newAnns, _SubmissionError; | ||
| var _ref3 = _asyncToGenerator( /*#__PURE__*/_regenerator["default"].mark(function _callee3(_ref2) { | ||
| var apeFile, csvFile, convertNonStandardTypes, annsToCheck, _seqsToAnnotateById, validateRow, _iterator, _step, _step$value, i, _step$value$, name, sequence, type, isRegex, csvHeaders, _yield$parseCsvFile, data, fields, _error, _iterator2, _step2, _step2$value, index, row, _error2, _yield$parseCsvFile2, _data, _iterator3, _step3, _step3$value, _i, _step3$value$, _name, _sequence, _type, annotationsToCheckById, seqId, _autoAnnotate, newAnns, _SubmissionError; | ||
| return _regenerator["default"].wrap(function _callee2$(_context2) { | ||
| return _regenerator["default"].wrap(function _callee3$(_context3) { | ||
| while (1) { | ||
| switch (_context2.prev = _context2.next) { | ||
| switch (_context3.prev = _context3.next) { | ||
| case 0: | ||
| apeFile = _ref.apeFile, csvFile = _ref.csvFile; | ||
| apeFile = _ref2.apeFile, csvFile = _ref2.csvFile; | ||
| convertNonStandardTypes = false; | ||
| annsToCheck = []; | ||
| _context2.prev = 3; | ||
| _context3.prev = 3; | ||
| validateRow = /*#__PURE__*/function () { | ||
| var _ref3 = _asyncToGenerator( /*#__PURE__*/_regenerator["default"].mark(function _callee(row, rowName) { | ||
| var _ref4 = _asyncToGenerator( /*#__PURE__*/_regenerator["default"].mark(function _callee2(row, rowName) { | ||
| var _row$type, type, sequence, regexConvertedSeq, cleanedType; | ||
| return _regenerator["default"].wrap(function _callee$(_context) { | ||
| return _regenerator["default"].wrap(function _callee2$(_context2) { | ||
| while (1) { | ||
| switch (_context.prev = _context.next) { | ||
| switch (_context2.prev = _context2.next) { | ||
| case 0: | ||
@@ -226,3 +293,3 @@ _row$type = row.type, type = _row$type === void 0 ? "" : _row$type, sequence = row.sequence; | ||
| if (!(annotationType === "feature")) { | ||
| _context.next = 14; | ||
| _context2.next = 14; | ||
| break; | ||
@@ -236,3 +303,3 @@ } | ||
| if (cleanedType) { | ||
| _context.next = 13; | ||
| _context2.next = 13; | ||
| break; | ||
@@ -242,7 +309,7 @@ } | ||
| if (convertNonStandardTypes) { | ||
| _context.next = 10; | ||
| _context2.next = 10; | ||
| break; | ||
| } | ||
| _context.next = 7; | ||
| _context2.next = 7; | ||
| return showConfirmationDialog({ | ||
@@ -254,6 +321,6 @@ cancelButtonText: "Stop Auto-Annotate", | ||
| case 7: | ||
| convertNonStandardTypes = _context.sent; | ||
| convertNonStandardTypes = _context2.sent; | ||
| if (convertNonStandardTypes) { | ||
| _context.next = 10; | ||
| _context2.next = 10; | ||
| break; | ||
@@ -268,3 +335,3 @@ } | ||
| row.type = "misc_feature"; | ||
| _context.next = 14; | ||
| _context2.next = 14; | ||
| break; | ||
@@ -277,3 +344,3 @@ | ||
| if (sequence) { | ||
| _context.next = 16; | ||
| _context2.next = 16; | ||
| break; | ||
@@ -288,15 +355,15 @@ } | ||
| if (!(row.isRegex && row.isRegex.toUpperCase() === "TRUE")) { | ||
| _context.next = 27; | ||
| _context2.next = 27; | ||
| break; | ||
| } | ||
| _context.prev = 17; | ||
| _context2.prev = 17; | ||
| new RegExp(regexConvertedSeq); //just trying out whether the regexConvertedSeq will work as a valid regex | ||
| _context.next = 24; | ||
| _context2.next = 24; | ||
| break; | ||
| case 21: | ||
| _context.prev = 21; | ||
| _context.t0 = _context["catch"](17); | ||
| _context2.prev = 21; | ||
| _context2.t0 = _context2["catch"](17); | ||
| throw { | ||
@@ -308,3 +375,3 @@ validationError: rowName + " has an invalid sequence/regex. Please fix it manually." | ||
| row.isRegex = true; | ||
| _context.next = 28; | ||
| _context2.next = 28; | ||
| break; | ||
@@ -320,15 +387,47 @@ | ||
| case "end": | ||
| return _context.stop(); | ||
| return _context2.stop(); | ||
| } | ||
| } | ||
| }, _callee, null, [[17, 21]]); | ||
| }, _callee2, null, [[17, 21]]); | ||
| })); | ||
| return function validateRow(_x2, _x3) { | ||
| return _ref3.apply(this, arguments); | ||
| return _ref4.apply(this, arguments); | ||
| }; | ||
| }(); | ||
| if (!(fileType === "implementerDefined")) { | ||
| _context3.next = 15; | ||
| break; | ||
| } | ||
| _iterator = _createForOfIteratorHelperLoose(customAnnResponse.list.entries()); | ||
| case 7: | ||
| if ((_step = _iterator()).done) { | ||
| _context3.next = 13; | ||
| break; | ||
| } | ||
| _step$value = _step.value, // eslint-disable-next-line no-unused-vars | ||
| i = _step$value[0], _step$value$ = _step$value[1], name = _step$value$.name, sequence = _step$value$.sequence, type = _step$value$.type, isRegex = _step$value$.isRegex; | ||
| _context3.next = 11; | ||
| return validateRow({ | ||
| name: name, | ||
| sequence: sequence, | ||
| type: type, | ||
| isRegex: isRegex ? "TRUE" : "FALSE" | ||
| }, "Row " + (i + 1) + " (" + name + ")"); | ||
| case 11: | ||
| _context3.next = 7; | ||
| break; | ||
| case 13: | ||
| _context3.next = 55; | ||
| break; | ||
| case 15: | ||
| if (!(fileType === "csvFile")) { | ||
| _context2.next = 29; | ||
| _context3.next = 39; | ||
| break; | ||
@@ -344,7 +443,7 @@ } | ||
| csvHeaders.push("isRegex"); | ||
| _context2.next = 11; | ||
| _context3.next = 21; | ||
| return (0, _fileUtils.parseCsvFile)(csvFile[0]); | ||
| case 11: | ||
| _yield$parseCsvFile = _context2.sent; | ||
| case 21: | ||
| _yield$parseCsvFile = _context3.sent; | ||
| data = _yield$parseCsvFile.data; | ||
@@ -355,3 +454,3 @@ fields = _yield$parseCsvFile.meta.fields; | ||
| if (!_error) { | ||
| _context2.next = 17; | ||
| _context3.next = 27; | ||
| break; | ||
@@ -364,16 +463,16 @@ } | ||
| case 17: | ||
| _iterator = _createForOfIteratorHelperLoose(data.entries()); | ||
| case 27: | ||
| _iterator2 = _createForOfIteratorHelperLoose(data.entries()); | ||
| case 18: | ||
| if ((_step = _iterator()).done) { | ||
| _context2.next = 27; | ||
| case 28: | ||
| if ((_step2 = _iterator2()).done) { | ||
| _context3.next = 37; | ||
| break; | ||
| } | ||
| _step$value = _step.value, index = _step$value[0], row = _step$value[1]; | ||
| _step2$value = _step2.value, index = _step2$value[0], row = _step2$value[1]; | ||
| _error2 = (0, _fileUtils.validateCSVRow)(row, csvHeaders, index); | ||
| if (!_error2) { | ||
| _context2.next = 23; | ||
| _context3.next = 33; | ||
| break; | ||
@@ -386,21 +485,21 @@ } | ||
| case 23: | ||
| _context2.next = 25; | ||
| return validateRow(row, "Row " + (index + 1)); | ||
| case 33: | ||
| _context3.next = 35; | ||
| return validateRow(row, "Row " + (index + 1) + " (" + row.name + ")"); | ||
| case 25: | ||
| _context2.next = 18; | ||
| case 35: | ||
| _context3.next = 28; | ||
| break; | ||
| case 27: | ||
| _context2.next = 45; | ||
| case 37: | ||
| _context3.next = 55; | ||
| break; | ||
| case 29: | ||
| case 39: | ||
| if (!(fileType === "apeFile")) { | ||
| _context2.next = 43; | ||
| _context3.next = 53; | ||
| break; | ||
| } | ||
| _context2.next = 32; | ||
| _context3.next = 42; | ||
| return (0, _fileUtils.parseCsvFile)(apeFile[0], { | ||
@@ -410,42 +509,42 @@ header: false | ||
| case 32: | ||
| _yield$parseCsvFile2 = _context2.sent; | ||
| case 42: | ||
| _yield$parseCsvFile2 = _context3.sent; | ||
| _data = _yield$parseCsvFile2.data; | ||
| _iterator2 = _createForOfIteratorHelperLoose(_data.entries()); | ||
| _iterator3 = _createForOfIteratorHelperLoose(_data.entries()); | ||
| case 35: | ||
| if ((_step2 = _iterator2()).done) { | ||
| _context2.next = 41; | ||
| case 45: | ||
| if ((_step3 = _iterator3()).done) { | ||
| _context3.next = 51; | ||
| break; | ||
| } | ||
| _step2$value = _step2.value, i = _step2$value[0], _step2$value$ = _step2$value[1], name = _step2$value$[0], sequence = _step2$value$[1], type = _step2$value$[2]; | ||
| _context2.next = 39; | ||
| _step3$value = _step3.value, _i = _step3$value[0], _step3$value$ = _step3$value[1], _name = _step3$value$[0], _sequence = _step3$value$[1], _type = _step3$value$[2]; | ||
| _context3.next = 49; | ||
| return validateRow({ | ||
| name: name, | ||
| sequence: sequence, | ||
| type: type | ||
| }, "Row " + (i + 1)); | ||
| name: _name, | ||
| sequence: _sequence, | ||
| type: _type | ||
| }, "Row " + (_i + 1) + " (" + _name + ")"); | ||
| case 39: | ||
| _context2.next = 35; | ||
| case 49: | ||
| _context3.next = 45; | ||
| break; | ||
| case 41: | ||
| _context2.next = 45; | ||
| case 51: | ||
| _context3.next = 55; | ||
| break; | ||
| case 43: | ||
| case 53: | ||
| console.info("we shouldn't be here!"); | ||
| console.info("fileType:", fileType); | ||
| case 45: | ||
| case 55: | ||
| if (annsToCheck.length) { | ||
| _context2.next = 47; | ||
| _context3.next = 57; | ||
| break; | ||
| } | ||
| return _context2.abrupt("return", window.toastr.warning("No Annotations Detected on File. Please check that your file is in the correct format.")); | ||
| return _context3.abrupt("return", window.toastr.warning("No Annotations Detected on File. Please check that your file is in the correct format.")); | ||
| case 47: | ||
| case 57: | ||
| annotationsToCheckById = {}; | ||
@@ -481,30 +580,30 @@ annsToCheck.forEach(function (ann) { | ||
| _context2.next = 62; | ||
| _context3.next = 72; | ||
| break; | ||
| case 54: | ||
| _context2.prev = 54; | ||
| _context2.t0 = _context2["catch"](3); | ||
| console.error("error:", _context2.t0); | ||
| case 64: | ||
| _context3.prev = 64; | ||
| _context3.t0 = _context3["catch"](3); | ||
| console.error("error:", _context3.t0); | ||
| if (!_context2.t0.validationError) { | ||
| _context2.next = 61; | ||
| if (!_context3.t0.validationError) { | ||
| _context3.next = 71; | ||
| break; | ||
| } | ||
| throw new SubmissionError((_SubmissionError = {}, _SubmissionError[fileType] = _context2.t0.validationError, _SubmissionError)); | ||
| throw new SubmissionError((_SubmissionError = {}, _SubmissionError[fileType] = _context3.t0.validationError, _SubmissionError)); | ||
| case 61: | ||
| case 71: | ||
| window.toastr.error("Error annotating " + annotationType + "(s). Double check your file to make sure it is valid!"); | ||
| case 62: | ||
| case 72: | ||
| case "end": | ||
| return _context2.stop(); | ||
| return _context3.stop(); | ||
| } | ||
| } | ||
| }, _callee2, null, [[3, 54]]); | ||
| }, _callee3, null, [[3, 64]]); | ||
| })); | ||
| return function (_x) { | ||
| return _ref2.apply(this, arguments); | ||
| return _ref3.apply(this, arguments); | ||
| }; | ||
@@ -519,2 +618,4 @@ }()), | ||
| window._ove_addons.autoAnnotateParts = autoAnnotateParts; | ||
| window._ove_addons.autoAnnotatePrimers = autoAnnotatePrimers; | ||
| window._ove_addons.autoAnnotatePrimers = autoAnnotatePrimers; | ||
| var customAnnsSchema = ["name", "sequence", typeField, "isRegex"]; | ||
| var customAnnsSchemaNoType = ["name", "sequence", typeField, "isRegex"]; |
| { | ||
| "name": "ove-auto-annotate", | ||
| "version": "0.0.3", | ||
| "version": "0.0.4", | ||
| "scripts": { | ||
@@ -5,0 +5,0 @@ "build": "nwb build-react-component --copy-files --no-demo", |
@@ -44,3 +44,7 @@ import { formName } from "./constants"; | ||
| formName={formName} | ||
| entities={newAnnotations} | ||
| entities={newAnnotations.map((e) => ({ | ||
| ...e, | ||
| start: e.start + 1, | ||
| end: e.end + 1 | ||
| }))} | ||
| withCheckboxes | ||
@@ -47,0 +51,0 @@ schema={annotationType === "feature" ? schemaFeatures : schemaOther} |
@@ -38,3 +38,6 @@ /* eslint-disable jsx-a11y/anchor-is-valid */ | ||
| convertApELikeRegexToRegex, | ||
| autoAnnotate | ||
| autoAnnotate, | ||
| useEffect, | ||
| DataTable, | ||
| typeField | ||
| } = window.addOnGlobals; | ||
@@ -78,6 +81,25 @@ | ||
| annotationType = "feature", | ||
| error | ||
| error, | ||
| getCustomAutoAnnotateList | ||
| } = props; | ||
| const [fileType, setSelectedImportType] = useState("csvFile"); | ||
| const [newAnnotations, setNewAnns] = useState(false); | ||
| const [customAnnResponse, setCustomAnnResponse] = useState(); | ||
| const [loadingCustomAnnList, setLoadingCustomAnnList] = useState(); | ||
| useEffect(() => { | ||
| (async () => { | ||
| if (getCustomAutoAnnotateList) { | ||
| setLoadingCustomAnnList(true); | ||
| try { | ||
| const anns = await getCustomAutoAnnotateList(props); | ||
| setCustomAnnResponse(anns); | ||
| } catch (e) { | ||
| window.toastr.warning("Error loading custom annotation list"); | ||
| console.error(`e:`, e); | ||
| } finally { | ||
| setLoadingCustomAnnList(false); | ||
| } | ||
| } | ||
| })(); | ||
| }, [getCustomAutoAnnotateList, props]); | ||
| if (newAnnotations) { | ||
@@ -218,5 +240,46 @@ return ( | ||
| ></Tab> | ||
| {getCustomAutoAnnotateList && | ||
| (loadingCustomAnnList ? ( | ||
| <Tab disabled title="Loading..."></Tab> | ||
| ) : ( | ||
| customAnnResponse && ( | ||
| <Tab | ||
| id="implementerDefined" | ||
| title={ | ||
| (customAnnResponse && customAnnResponse.title) || | ||
| "Custom List" | ||
| } | ||
| panel={ | ||
| customAnnResponse && | ||
| customAnnResponse.list && | ||
| customAnnResponse.list.length ? ( | ||
| <div> | ||
| <DataTable | ||
| isInfinite | ||
| schema={ | ||
| annotationType === "feature" | ||
| ? customAnnsSchema | ||
| : customAnnsSchemaNoType | ||
| } | ||
| entities={customAnnResponse.list} | ||
| ></DataTable> | ||
| </div> | ||
| ) : ( | ||
| <div>No Annotations Found</div> | ||
| ) | ||
| } | ||
| ></Tab> | ||
| ) | ||
| ))} | ||
| </Tabs> | ||
| <DialogFooter | ||
| hideModal={hideDialog} | ||
| disabled={ | ||
| fileType === "implementerDefined" && | ||
| !( | ||
| customAnnResponse && | ||
| customAnnResponse.list && | ||
| customAnnResponse.list.length | ||
| ) | ||
| } | ||
| onClick={handleSubmit(async ({ apeFile, csvFile }) => { | ||
@@ -270,3 +333,15 @@ let convertNonStandardTypes = false; | ||
| }; | ||
| if (fileType === "csvFile") { | ||
| if (fileType === "implementerDefined") { | ||
| for (const [ | ||
| // eslint-disable-next-line no-unused-vars | ||
| i, | ||
| // eslint-disable-next-line no-unused-vars | ||
| { name, sequence, type, isRegex } | ||
| ] of customAnnResponse.list.entries()) { | ||
| await validateRow( | ||
| { name, sequence, type, isRegex: isRegex ? "TRUE" : "FALSE" }, | ||
| `Row ${i + 1} (${name})` | ||
| ); | ||
| } | ||
| } else if (fileType === "csvFile") { | ||
| const csvHeaders = ["name", "description", "sequence"]; | ||
@@ -296,3 +371,3 @@ if (annotationType === "feature") { | ||
| } | ||
| await validateRow(row, `Row ${index + 1}`); | ||
| await validateRow(row, `Row ${index + 1} (${row.name})`); | ||
| } | ||
@@ -305,3 +380,6 @@ } else if (fileType === "apeFile") { | ||
| for (const [i, [name, sequence, type]] of data.entries()) { | ||
| await validateRow({ name, sequence, type }, `Row ${i + 1}`); | ||
| await validateRow( | ||
| { name, sequence, type }, | ||
| `Row ${i + 1} (${name})` | ||
| ); | ||
| } | ||
@@ -377,1 +455,4 @@ } else { | ||
| window._ove_addons.autoAnnotatePrimers = autoAnnotatePrimers; | ||
| const customAnnsSchema = ["name", "sequence", typeField, "isRegex"]; | ||
| const customAnnsSchemaNoType = ["name", "sequence", typeField, "isRegex"]; |
@@ -1,2 +0,2 @@ | ||
| /*! ove-auto-annotate v0.0.3 */ | ||
| /*! ove-auto-annotate v0.0.4 */ | ||
| !function(e,t){if("object"==typeof exports&&"object"==typeof module)module.exports=t();else if("function"==typeof define&&define.amd)define([],t);else{var n=t();for(var r in n)("object"==typeof exports?exports:e)[r]=n[r]}}(window,(function(){return function(e){var t={};function n(r){if(t[r])return t[r].exports;var i=t[r]={i:r,l:!1,exports:{}};return e[r].call(i.exports,i,i.exports,n),i.l=!0,i.exports}return n.m=e,n.c=t,n.d=function(e,t,r){n.o(e,t)||Object.defineProperty(e,t,{enumerable:!0,get:r})},n.r=function(e){"undefined"!=typeof Symbol&&Symbol.toStringTag&&Object.defineProperty(e,Symbol.toStringTag,{value:"Module"}),Object.defineProperty(e,"__esModule",{value:!0})},n.t=function(e,t){if(1&t&&(e=n(e)),8&t)return e;if(4&t&&"object"==typeof e&&e&&e.__esModule)return e;var r=Object.create(null);if(n.r(r),Object.defineProperty(r,"default",{enumerable:!0,value:e}),2&t&&"string"!=typeof e)for(var i in e)n.d(r,i,function(t){return e[t]}.bind(null,i));return r},n.n=function(e){var t=e&&e.__esModule?function(){return e.default}:function(){return e};return n.d(t,"a",t),t},n.o=function(e,t){return Object.prototype.hasOwnProperty.call(e,t)},n.p="",n(n.s=3)}([function(e,t,n){e.exports=n(4)},function(e,t,n){var r,i,a; | ||
@@ -8,3 +8,3 @@ /* @license | ||
| License: MIT | ||
| */i=[],void 0===(a="function"==typeof(r=function e(){"use strict";var t="undefined"!=typeof self?self:"undefined"!=typeof window?window:void 0!==t?t:{},n=!t.document&&!!t.postMessage,r=n&&/blob:/i.test((t.location||{}).protocol),i={},a=0,o={parse:function(n,r){var s=(r=r||{}).dynamicTyping||!1;if(w(s)&&(r.dynamicTypingFunction=s,s={}),r.dynamicTyping=s,r.transform=!!w(r.transform)&&r.transform,r.worker&&o.WORKERS_SUPPORTED){var l=function(){if(!o.WORKERS_SUPPORTED)return!1;var n,r,s=(n=t.URL||t.webkitURL||null,r=e.toString(),o.BLOB_URL||(o.BLOB_URL=n.createObjectURL(new Blob(["(",r,")();"],{type:"text/javascript"})))),l=new t.Worker(s);return l.onmessage=v,l.id=a++,i[l.id]=l}();return l.userStep=r.step,l.userChunk=r.chunk,l.userComplete=r.complete,l.userError=r.error,r.step=w(r.step),r.chunk=w(r.chunk),r.complete=w(r.complete),r.error=w(r.error),delete r.worker,void l.postMessage({input:n,config:r,workerId:l.id})}var h=null;return o.NODE_STREAM_INPUT,"string"==typeof n?h=r.download?new u(r):new d(r):!0===n.readable&&w(n.read)&&w(n.on)?h=new f(r):(t.File&&n instanceof File||n instanceof Object)&&(h=new c(r)),h.stream(n)},unparse:function(e,t){var n=!1,r=!0,i=",",a="\r\n",s='"',l=s+s,u=!1,c=null,d=!1;!function(){if("object"==typeof t){if("string"!=typeof t.delimiter||o.BAD_DELIMITERS.filter((function(e){return-1!==t.delimiter.indexOf(e)})).length||(i=t.delimiter),("boolean"==typeof t.quotes||"function"==typeof t.quotes||Array.isArray(t.quotes))&&(n=t.quotes),"boolean"!=typeof t.skipEmptyLines&&"string"!=typeof t.skipEmptyLines||(u=t.skipEmptyLines),"string"==typeof t.newline&&(a=t.newline),"string"==typeof t.quoteChar&&(s=t.quoteChar),"boolean"==typeof t.header&&(r=t.header),Array.isArray(t.columns)){if(0===t.columns.length)throw new Error("Option columns is empty");c=t.columns}void 0!==t.escapeChar&&(l=t.escapeChar+s),"boolean"==typeof t.escapeFormulae&&(d=t.escapeFormulae)}}();var f=new RegExp(p(s),"g");if("string"==typeof 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| //# sourceMappingURL=ove-auto-annotate.min.js.map |
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Fixed alerts
No README
QualityPackage does not have a README. This may indicate a failed publish or a low quality package.
Found 1 instance in 1 package
Improved metrics
- Total package byte prevSize
- increased by6.22%
513003
- Number of package files
- increased by4.76%
22
- Lines of code
- increased by8.93%
4549
- Number of medium quality alerts
- decreased by-50%
1
- Number of lines in readme file
- increased byInfinity%
78
No dependency changes