peptide - npm Package Compare versions

Comparing version 1.0.0 to 1.0.1

bower.json

 {
   "name": "peptide",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "description": "Peptide",
@@ -5,0 +5,0 @@ "keywords": [

package.json

 {
   "name": "peptide",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "description": "Peptide",
@@ -5,0 +5,0 @@ "keywords": [

README.md

@@ -27,6 +27,10 @@ # peptide
 
-#### chargePeptide(mf)
+#### chargePeptide(mf, options)
 
-Add a positive charge on Arg, His and Lys
+Charge the peptide at a specific pH
 
+options:
+* pH : you may specify the pH to calculate the protonation state. By default: 0,
+  it has the consequence to add a positive charge on Arg, His and Lys.
+
 __Arguments__
@@ -33,0 +37,0 @@

src/index.js

 'use strict';
 
-var aa = require('./amino_acid');
+var aa = require('./aminoAcids');
 var IEP = require('./isoElectricPoint');
+var chargePeptide = require('./chargePeptide');
 
-
 exports.getInfo = function () {
@@ -85,6 +85,5 @@ return aa;
 
-exports.chargePeptide = function chargePeptide(mf) {
-    return mf.replace(/^H([^+])/, 'H+H$1').replace(/(Arg|His|Lys)(?!\()/g, '$1(H+)');
-};
+exports.chargePeptide = chargePeptide;
 
+
 function aa1To3(code) {
@@ -91,0 +90,0 @@ for (var i = 0; i < aa.length; i++) {

src/isoElectricPoint.js

 'use strict';
 
 
-var aa = require('./amino_acid');
+var aa = require('./aminoAcids');
 
@@ -6,0 +6,0 @@ // we will convert the data to an object to be much faster

No alert changes

Improved metrics

Total package byte prevSize

20321

increased by10.34%

Number of package files

14

increased by16.67%

Lines of code

591

increased by9.44%

Number of lines in readme file

107

increased by3.88%

No dependency changes