peptide - npm Package Compare versions

Comparing version 1.4.0 to 1.4.1

bower.json

 {
   "name": "peptide",
-  "version": "1.4.0",
+  "version": "1.4.1",
   "description": "Peptide",
@@ -5,0 +5,0 @@ "keywords": [

package.json

 {
   "name": "peptide",
-  "version": "1.4.0",
+  "version": "1.4.1",
   "description": "Peptide",
@@ -5,0 +5,0 @@ "keywords": [

README.md

@@ -29,12 +29,13 @@ # peptide
 
-Charge the peptide at a specific pH
+Charge the peptide at a specific pH. 'mf' is either a 3 letter peptide sequence or an array of peptide sequences.
 
-options:
-* pH : you may specify the pH to calculate the protonation state. By default: 0,
-  it has the consequence to add a positive charge on Arg, His and Lys.
-
 __Arguments__
 
 * `mf` - string with a molecular formula to charge
+* options:
+ * pH : you may specify the pH to calculate the protonation state. By default: 0,
+   it has the consequence to add a positive charge on Arg, His and Lys.
 
+
+
 #### generatePeptideFragments(mf, [options])
@@ -41,0 +42,0 @@

src/digestPeptide.js

@@ -29,7 +29,12 @@ 'use strict';
 
+    var from=0;
     for (var i=0; i<fragments.length; i++) {
+        var nbResidue=splitSequence(fragments[i]).length;
         fragments[i]={
             sequence:fragments[i],
-            nbResidue:splitSequence(fragments[i]).length
+            nbResidue:nbResidue,
+            from:from+1,
+            to:from+nbResidue
         }
+        from+=nbResidue;
     }
@@ -46,6 +51,8 @@
                 fragment+=fragments[k].sequence;
-                nbResidue+=fragments[k].nbResidue
+                nbResidue+=fragments[k].nbResidue;
             }
+            var from=fragments[i].from;
+            var to=fragments[i+j].to;
             if (fragment && nbResidue>=options.minResidue && nbResidue<=options.maxResidue) {
-                results.push("H"+fragment+"OH");
+                results.push("H"+fragment+"OH"+"$D"+from+"-"+to);
             }
@@ -52,0 +59,0 @@ }

Fixed alerts

New author

Supply chain risk

A new npm collaborator published a version of the package for the first time. New collaborators are usually benign additions to a project, but do indicate a change to the security surface area of a package.

Found 1 instance in 1 package

Improved metrics

Total package byte prevSize

24865

increased by1.26%

Lines of code

691

increased by1.02%

Number of lines in readme file

138

increased by0.73%

Number of medium supply chain risk alerts

0

decreased by-100%

No dependency changes