peptide - npm Package Compare versions

Comparing version 1.5.1 to 1.5.2

bower.json

 {
   "name": "peptide",
-  "version": "1.5.1",
+  "version": "1.5.2",
   "description": "Peptide",
@@ -5,0 +5,0 @@ "keywords": [

package.json

 {
   "name": "peptide",
-  "version": "1.5.1",
+  "version": "1.5.2",
   "description": "Peptide",
@@ -5,0 +5,0 @@ "keywords": [

README.md

@@ -61,3 +61,3 @@ # peptide
 
-You can also specify internal fragments using the options 'ya' and 'yb' as well as the minimal length of internal fragments 'minInternal'
+You can also specify internal fragments using the options 'ya', 'yb', 'yc' and 'zc' as well as the minimal length of internal fragments 'minInternal'
 and the maximal length of internal fragments 'maxInternal'
@@ -64,0 +64,0 @@

src/generatePeptideFragments.js

@@ -13,4 +13,6 @@ 'use strict';
             i: false,
+            ya: false,
             yb: false,
-            ya: false
+            yc: false,
+            zc: false
         };
@@ -35,6 +37,6 @@ }
 
-        if (options.ya || options.yb) { // we have double fragmentations
+        if (options.ya || options.yb || options.yc || options.zc) { // we have double fragmentations
             for (var j=i+1; j<Math.min(mfparts.length,options.maxInternal+i+1);j++) {
                 var iTerm='';
-                if ((j-i)>=options.minInternal){
+                if ((j-i)>=options.minInternal) {
                     for (var k = i; k < j; k++) {
@@ -49,3 +51,2 @@ iTerm += mfparts[k];
 
-
     if (mfs.length === 0) {
@@ -68,2 +69,4 @@ mfs = mfs.concat([mf]);
     if (options.yb) mfs.push("H"+iTerm+"(+1)$b"+j+"y"+i);
+    if (options.yc) mfs.push("H"+iTerm+"NH3(+1)$c"+j+"y"+i);
+    if (options.zc) mfs.push("N-1"+iTerm+"NH3(+1)$c"+j+"z"+i);
 }
@@ -70,0 +73,0 @@

No alert changes

Improved metrics

Total package byte prevSize

26218

increased by0.81%

Lines of code

721

increased by0.56%

No dependency changes