Create, execute, and introspect reproducible composite simulations of dynamic biological systems.
The complete BioCompose documentation can be found here: https://bio-compose.readthedocs.io/en/latest/
bio_compose API:The primary method of user-facing interaction for this service is done through the use of a high-level "notebook" api called bio_check.
A convenient notebook demonstrating the functionality of this service is hosted on Google Colab and can be accessed by clicking the above "Open In Colab" badge.
Installation of this tooling can be performed using PyPI as such:
pip install bio-compose
A convienient template notebook for converting the outputs of Smoldyn simulations to Simularium trajectories can be found here.
FAQs
Create, execute, and introspect reproducible composite simulations of dynamic biological systems.
We found that bio-compose demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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