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bioutils -- bioinformatics utilities and lookup tables !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
|pypi_badge| |build_status| |cov_badge| |cc_badge| |issues_badge| |contributors| |license| |changelog|
bioutils provides some common utilities and lookup tables for bioinformatics.
- bioutils.accessions -- parse accessions, infer namespaces
- bioutils.assemblies -- Human assembly information (from NCBI/GRCh)
- bioutils.cytobands -- map cytobands to coordinates (from UCSC cytoband tables)
- bioutils.digests -- implementations of various digests
- bioutils.normalize -- allele normalization (left shuffle, right shuffle, expanded, vcf)
To use an E-Utilities API key run add it to an environment variable
called ncbi_api_key and it will be used in the E-Utilities request.
.. |build_status| image:: https://travis-ci.org/biocommons/bioutils.svg?branch=master :target: https://travis-ci.org/biocommons/bioutils
.. |changelog| image:: https://img.shields.io/badge/docs-changelog-green.svg :target: https://bioutils.readthedocs.io
.. |contributors| image:: https://img.shields.io/github/contributors/biocommons/bioutils.svg :target: https://github.com/biocommons/bioutils
.. |docs| image:: https://img.shields.io/badge/docs-readthedocs-green.svg :target: http://bioutils.readthedocs.io/
.. |issues_badge| image:: https://img.shields.io/github/issues/biocommons/bioutils.png :target: https://github.com/biocommons/bioutils/issues
.. |license| image:: https://img.shields.io/github/license/biocommons/bioutils.svg :target: https://github.com/biocommons/bioutils/blob/master/LICENSE
.. |pypi_badge| image:: https://img.shields.io/pypi/v/bioutils.svg :target: https://pypi.org/project/bioutils/
.. |cc_badge| image:: https://api.codeclimate.com/v1/badges/3a99e06ad0a842174b0a/maintainability :target: https://codeclimate.com/github/biocommons/bioutils/maintainability :alt: Maintainability
.. |cov_badge| image:: https://coveralls.io/repos/github/biocommons/bioutils/badge.svg?branch=master :target: https://coveralls.io/github/biocommons/bioutils?branch=master
Keywords
FAQs
miscellaneous simple bioinformatics utilities and lookup tables
We found that bioutils demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 4 open source maintainers collaborating on the project.
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