calamus

.. Copyright 2017-2020 - Swiss Data Science Center (SDSC) A partnership between École Polytechnique Fédérale de Lausanne (EPFL) and Eidgenössische Technische Hochschule Zürich (ETHZ).

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.

.. image:: https://github.com/SwissDataScienceCenter/calamus/blob/master/docs/reed.png?raw=true :align: center

================================================== calamus: JSON-LD Serialization Library for Python

.. image:: https://readthedocs.org/projects/calamus/badge/?version=latest :target: https://calamus.readthedocs.io/en/latest/en/latest/?badge=latest :alt: Documentation Status

.. image:: https://github.com/SwissDataScienceCenter/calamus/workflows/Test,%20Integration%20Tests%20and%20Deploy/badge.svg :target: https://github.com/SwissDataScienceCenter/calamus/actions?query=workflow%3A%22Test%2C+Integration+Tests+and+Deploy%22+branch%3Amaster

.. image:: https://badges.gitter.im/SwissDataScienceCenter/calamus.svg :target: https://gitter.im/SwissDataScienceCenter/calamus?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge

calamus is a library built on top of marshmallow to allow (de-)Serialization of Python classes to JSON-LD

Installation

calamus releases and development versions are available from PyPI <https://pypi.org/project/calamus/>_. You can install it using any tool that knows how to handle PyPI packages.

With pip:

::

$ pip install calamus

Usage

Assuming you have a class like

.. code-block:: python

class Book:
    def __init__(self, _id, name):
        self._id = _id
        self.name = name

Declare schemes

You can declare a schema for serialization like

.. code-block:: python

from calamus import fields
from calamus.schema import JsonLDSchema

schema = fields.Namespace("http://schema.org/")

class BookSchema(JsonLDSchema):
    _id = fields.Id()
    name = fields.String(schema.name)

    class Meta:
        rdf_type = schema.Book
        model = Book

The fields.Namespace class represents an ontology namespace.

Make sure to set rdf_type to the RDF triple type you want get and model to the python class this schema applies to.

Serializing objects ("Dumping")

You can now easily serialize python classes to JSON-LD

.. code-block:: python

book = Book(_id="http://example.com/books/1", name="Ilias")
jsonld_dict = BookSchema().dump(book)
#{
#    "@id": "http://example.com/books/1",
#    "@type": "http://schema.org/Book",
#    "http://schema.org/name": "Ilias",
#}

jsonld_string = BookSchema().dumps(book)
#'{"@id": "http://example.com/books/1", "http://schema.org/name": "Ilias", "@type": "http://schema.org/Book"}')

Deserializing objects ("Loading")

You can also easily deserialize JSON-LD to python objects

.. code-block:: python

data = {
    "@id": "http://example.com/books/1",
    "@type": "http://schema.org/Book",
    "http://schema.org/name": "Ilias",
}
book = BookSchema().load(data)
#<Book(_id="http://example.com/books/1", name="Ilias")>

Validation of properties in a namespace using an OWL ontology

You can validate properties in a python class during serialization using an OWL ontology. The ontology used in the example below doesn't have publishedYear defined as a property. ::

class Book:
    def __init__(self, _id, name, author, publishedYear):
        self._id = _id
        self.name = name
        self.author = author
        self.publishedYear = publishedYear

class BookSchema(JsonLDSchema):
    _id = fields.Id()
    name = fields.String(schema.name)
    author = fields.String(schema.author)
    publishedYear = fields.Integer(schema.publishedYear)

    class Meta:
       rdf_type = schema.Book
       model = Book

book = Book(id="http://example.com/books/2", name="Outliers", author="Malcolm Gladwell", publishedYear=2008)

data = {
    "@id": "http://example.com/books/3",
    "@type": "http://schema.org/Book",
    "http://schema.org/name" : "Harry Potter & The Prisoner of Azkaban",
    "http://schema.org/author" : "J. K. Rowling",
    "http://schema.org/publishedYear" : 1999
}

valid_invalid_dict = BookSchema().validate_properties(
    data,
    "tests/fixtures/book_ontology.owl"
)
# The ontology doesn't have a publishedYear property
# {'valid': {'http://schema.org/author', 'http://schema.org/name'}, 'invalid': {'http://schema.org/publishedYear'}}

validated_json = BookSchema().validate_properties(book, "tests/fixtures/book_ontology.owl", return_valid_data=True)
#{'@id': 'http://example.com/books/2', '@type': ['http://schema.org/Book'], 'http://schema.org/name': 'Outliers', 'http://schema.org/author': 'Malcolm Gladwell'}

You can also use this during deserialization. ::

class Book:
    def __init__(self, _id, name, author):
        self._id = _id
        self.name = name
        self.author = author

schema = fields.Namespace("http://schema.org/")

class BookSchema(JsonLDSchema):
    _id = fields.Id()
    name = fields.String(schema.name)
    author = fields.String(schema.author)

    class Meta:
        rdf_type = schema.Book
        model = Book

data = {
    "@id": "http://example.com/books/1",
    "@type": "http://schema.org/Book",
    "http://schema.org/name": "Harry Potter & The Chamber of Secrets",
    "http://schema.org/author": "J. K. Rowling",
    "http://schema.org/publishedYear": 1998,
}

verified_data = BookSchema().validate_properties(data, "tests/fixtures/book_ontology.owl", return_valid_data=True)

book_verified = BookSchema().load(verified_data)
#<Book(_id="http://example.com/books/1", name="Harry Potter & The Chamber of Secrets", author="J. K. Rowling")>

The function validate_properties has 3 arguments: data, ontology and return_valid_data.

data can be a Json-LD, a python object of the schema's model class, or a list of either of those.

ontology is a string pointing to the OWL ontology's location (path or URI).

return_valid_data is an optional argument with the default value False. Default behavior is to return dictionary with valid and invalid properties. Setting this to True returns the JSON-LD with only validated properties.

Annotations

Classes can also be annotated directly with schema information, removing the need to have a separate schema. This can be done by setting the metaclass of the model to JsonLDAnnotation.

.. code-block:: python

import datetime.datetime as dt

from calamus.schema import JsonLDAnnotation
import calamus.fields as fields

schema = fields.Namespace("http://schema.org/")

class User(metaclass=JsonLDAnnotation):
    _id = fields.Id()
    birth_date = fields.Date(schema.birthDate, default=dt.now)
    name = fields.String(schema.name, default=lambda: "John")

    class Meta:
        rdf_type = schema.Person

user = User()

# dumping
User.schema().dump(user)
# or
user.dump()

# loading
u = User.schema().load({"_id": "http://example.com/user/1", "name": "Bill", "birth_date": "1970-01-01 00:00"})

Support

You can reach us on our Gitter Channel <https://gitter.im/SwissDataScienceCenter/calamus>_.