CAVE is short for Connectome Annotation Versioning Engine. CAVE is a set of microservices that provide a framework for storing and versioning connectomics data and large sets of dynamic annotations, metadata, and segmentations. This repository supplies client-side code to easily interact with the microservices in CAVE.
A full description of the Connectome Annotation Versioning Engine can be found in this paper.
CAVEclient can be installed from PyPI:
pip install caveclient
To add optional dependencies (currently for interfacing with the segmentation, imagery, and some skeleton formats via cloud-volume), you can install with the following:
pip install caveclient[cv]
Currently we are officially supporting and testing against Python 3.8, 3.9, 3.10, 3.11 and 3.12.
To develop caveclient, install uv via
pip install uv
To run tests
uvx --from poethepoet poe test
to run linting
uvx --from poethepoet poe lint
to fix linting
uvx --from poethepoet poe lint-fix
You can find full documentation at caveconnectome.github.io/CAVEclient.
FAQs
A client for interacting with the Connectome Annotation Versioning Engine
We found that caveclient demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 3 open source maintainers collaborating on the project.
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