ndex-utils-dev

ndex-python-utilities

In addition to python, these utilities require some additional modules.

To install these modules, type the following commands:

pip install requests
pip install requests-toolbelt
pip install ndex

Utility Scripts:

In all scripts that have arguments username and password, these will be the username and password for the NDEx account that you are using.

upload-to-ndex.py

python upload-to-ndex.py <username> <password> <directory>

Where directory contains all of the network files you want to upload.

create_network_from_tsv.py

python create_network_from_tsv.py <username> <password> <ndex server> <tsv file> <import plan file> <network name> <network description>

change_network_descriptions.py

change_network_versions.py

make_networks_public.py

make_networks_private.py

delete_all_networks.py

get_user_account_statistics.py

download_pc_pathways.py

download_pc_pathways.py <datasource> <format>